KEGG   PATHWAY: msum00020
Entry
msum00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanoculleus submarinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msum00020  Citrate cycle (TCA cycle)
msum00020

Module
msum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msum00020]
Other DBs
GO: 0006099
Organism
Methanoculleus submarinus [GN:msum]
Gene
OH143_09165  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
OH143_10935  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OH143_04425  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OH143_04430  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OH143_10930  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OH143_10925  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
OH143_10940  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
OH143_10915  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OH143_10920  acetate--CoA ligase family protein [KO:K01903] [EC:6.2.1.5]
OH143_10950  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
OH143_10945  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
OH143_06495  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OH143_10695  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OH143_02430  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
OH143_02435  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
OH143_05870  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
OH143_10265  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
OH143_10270  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
OH143_05865  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
OH143_05875  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
OH143_10255  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
OH143_05880  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
OH143_10260  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msum00010  Glycolysis / Gluconeogenesis
msum00061  Fatty acid biosynthesis
msum00071  Fatty acid degradation
msum00190  Oxidative phosphorylation
msum00220  Arginine biosynthesis
msum00250  Alanine, aspartate and glutamate metabolism
msum00280  Valine, leucine and isoleucine degradation
msum00350  Tyrosine metabolism
msum00470  D-Amino acid metabolism
msum00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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