KEGG   PATHWAY: ned00020
Entry
ned00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nostoc edaphicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ned00020  Citrate cycle (TCA cycle)
ned00020

Module
ned_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ned00020]
ned_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ned00020]
Other DBs
GO: 0006099
Organism
Nostoc edaphicum [GN:ned]
Gene
HUN01_26200  citrate synthase [KO:K01647] [EC:2.3.3.1]
HUN01_10925  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HUN01_16185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUN01_24630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUN01_29430  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
HUN01_29435  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUN01_16220  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HUN01_18015  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUN01_26825  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
HUN01_14545  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUN01_15970  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HUN01_14980  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HUN01_20265  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HUN01_04715  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ned00010  Glycolysis / Gluconeogenesis
ned00053  Ascorbate and aldarate metabolism
ned00061  Fatty acid biosynthesis
ned00071  Fatty acid degradation
ned00190  Oxidative phosphorylation
ned00220  Arginine biosynthesis
ned00250  Alanine, aspartate and glutamate metabolism
ned00280  Valine, leucine and isoleucine degradation
ned00350  Tyrosine metabolism
ned00470  D-Amino acid metabolism
ned00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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