KEGG   PATHWAY: ocy00020
Entry
ocy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tepiditoga spiralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocy00020  Citrate cycle (TCA cycle)
ocy00020

Module
ocy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ocy00020]
ocy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ocy00020]
Other DBs
GO: 0006099
Organism
Tepiditoga spiralis [GN:ocy]
Gene
OSSY52_16020  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OSSY52_21100  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OSSY52_01620  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OSSY52_01890  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OSSY52_01880  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OSSY52_21040  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OSSY52_01870  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
OSSY52_21030  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
OSSY52_01610  ferredoxin [KO:K00176] [EC:1.2.7.3]
OSSY52_01900  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
OSSY52_06750  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OSSY52_06740  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
OSSY52_03440  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
OSSY52_03430  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
OSSY52_21270  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
OSSY52_01080  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
OSSY52_02790  porA; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
OSSY52_01070  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
OSSY52_02800  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
OSSY52_01100  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
OSSY52_02770  porC; pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
OSSY52_01090  vorD; 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
OSSY52_02780  porD; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ocy00010  Glycolysis / Gluconeogenesis
ocy00053  Ascorbate and aldarate metabolism
ocy00061  Fatty acid biosynthesis
ocy00062  Fatty acid elongation
ocy00071  Fatty acid degradation
ocy00190  Oxidative phosphorylation
ocy00220  Arginine biosynthesis
ocy00250  Alanine, aspartate and glutamate metabolism
ocy00280  Valine, leucine and isoleucine degradation
ocy00350  Tyrosine metabolism
ocy00470  D-Amino acid metabolism
ocy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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