KEGG   PATHWAY: ola00534
Entry
ola00534                    Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Oryzias latipes (Japanese medaka)
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
ola00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ola00534

Module
ola_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:ola00534]
ola_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:ola00534]
Other DBs
GO: 0030210
Organism
Oryzias latipes (Japanese medaka) [GN:ola]
Gene
100049390  xylosyltransferase 1 [KO:K00771] [EC:2.4.2.26]
100049492  xylt2; xylosyltransferase 2 [KO:K00771] [EC:2.4.2.26]
100049491  xylosyltransferase 1 isoform X3 [KO:K00771] [EC:2.4.2.26]
100049391  b4galt7; beta-1,4-galactosyltransferase 7 [KO:K00733] [EC:2.4.1.133]
100049392  b3galt6; beta-1,3-galactosyltransferase 6 [KO:K00734] [EC:2.4.1.134]
100049460  b3gat3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 [KO:K10158] [EC:2.4.1.135]
101174221  extl2; exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
101163453  extl3; exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
101167217  exostosin-1b [KO:K02366] [EC:2.4.1.224 2.4.1.225]
101164181  exostosin-1a [KO:K02366] [EC:2.4.1.224 2.4.1.225]
101169374  exostosin-1c [KO:K02366] [EC:2.4.1.224 2.4.1.225]
101163398  ext2; exostosin-2 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
101155779  ndst1; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 [KO:K02576] [EC:3.5.1.- 2.8.2.8]
101167762  ndst2; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
101157034  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1 [KO:K02579] [EC:3.5.1.- 2.8.2.8]
101168104  glce; D-glucuronyl C5-epimerase isoform X1 [KO:K01793] [EC:5.1.3.17]
101158479  hs2st1; heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
101173693  heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
101166175  heparan-sulfate 6-O-sulfotransferase 1-A [KO:K02514] [EC:2.8.2.-]
101174677  heparan-sulfate 6-O-sulfotransferase 2-like [KO:K08102] [EC:2.8.2.-]
101171311  heparan-sulfate 6-O-sulfotransferase 3-B [KO:K08103] [EC:2.8.2.-]
101166018  hs6st3; heparan-sulfate 6-O-sulfotransferase 3 [KO:K08103] [EC:2.8.2.-]
101166804  hs3st1; heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
101169760  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
101174369  heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
101156579  heparan sulfate glucosamine 3-O-sulfotransferase 2-like [KO:K07808] [EC:2.8.2.29]
101160852  heparan sulfate glucosamine 3-O-sulfotransferase 2 [KO:K07808] [EC:2.8.2.29]
101167367  heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [KO:K07809] [EC:2.8.2.30]
101161678  heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [KO:K07809] [EC:2.8.2.30]
101171614  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
101161194  heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [KO:K07809] [EC:2.8.2.30]
101165781  hs3st5; heparan sulfate glucosamine 3-O-sulfotransferase 5 [KO:K08104] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154   
G00155   
G00156   
G00157   
G00162   
G00163   
G00164   
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
ola00531  Glycosaminoglycan degradation
KO pathway
ko00534   
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