KEGG   PATHWAY: oro03050
Entry
oro03050                    Pathway                                
Name
Proteasome - Odobenus rosmarus divergens (Pacific walrus)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
oro03050  Proteasome
oro03050

Other DBs
GO: 0000502
Organism
Odobenus rosmarus divergens (Pacific walrus) [GN:oro]
Gene
101386154  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
101370479  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
101371659  PSMD12; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
101372861  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
101377239  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
101367701  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
101370220  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
101379161  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
101366941  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
101375306  SHFM1; 26S proteasome complex subunit DSS1 [KO:K10881]
101379335  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
101376165  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 isoform X1 [KO:K03028]
101369884  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
101364231  ADRM1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
101383957  PSMC2; 26S protease regulatory subunit 7 [KO:K03061]
101378408  PSMC1; 26S protease regulatory subunit 4 isoform X1 [KO:K03062]
101372591  PSMC5; 26S protease regulatory subunit 8 isoform X2 [KO:K03066]
101381345  PSMC6; 26S protease regulatory subunit 10B isoform X1 [KO:K03064]
101374974  PSMC3; 26S protease regulatory subunit 6A isoform X1 [KO:K03065]
101376490  PSMC4; 26S protease regulatory subunit 6B isoform X1 [KO:K03063]
101380685  PSME1; proteasome activator complex subunit 1 isoform X1 [KO:K06696]
101380395  PSME2; proteasome activator complex subunit 2 isoform X1 [KO:K06697]
101383134  PSME3; proteasome activator complex subunit 3 isoform X2 [KO:K06698]
101362932  PSME4; proteasome activator complex subunit 4 [KO:K06699]
101384419  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
101369658  PSMA2; LOW QUALITY PROTEIN: proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
101366790  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
101365329  PSMA7; proteasome subunit alpha type-7 isoform X1 [KO:K02731] [EC:3.4.25.1]
101369559  PSMA8; proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
101369446  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
101369701  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
101383782  LOW QUALITY PROTEIN: proteasome subunit alpha type-1-like [KO:K02725] [EC:3.4.25.1]
101375150  PSMA3; proteasome subunit alpha type-3 isoform X1 [KO:K02727] [EC:3.4.25.1]
101383081  PSMB6; proteasome subunit beta type-6 isoform X1 [KO:K02738] [EC:3.4.25.1]
101384372  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
101372538  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
101384908  PSMB2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
101366485  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
101382374  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
101382158  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
101370439  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
101382081  PSMB10; proteasome subunit beta type-10 [KO:K02733] [EC:3.4.25.1]
101371019  PSMB8; proteasome subunit beta type-8 isoform X1 [KO:K02740] [EC:3.4.25.1]
101386787  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
101382125  IFNG; interferon gamma [KO:K04687]
101371331  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
101376418  proteasome maturation protein [KO:K11599]
101383834  POMP; proteasome maturation protein isoform X1 [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
oro04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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