KEGG   PATHWAY: aaf04144
Entry
aaf04144                    Pathway                                
Name
Endocytosis - Aureococcus anophagefferens
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
aaf04144  Endocytosis
aaf04144

Other DBs
GO: 0006897
Organism
Aureococcus anophagefferens [GN:aaf]
Gene
AURANDRAFT_23649  hypothetical protein [KO:K00889] [EC:2.7.1.68]
AURANDRAFT_71221  hypothetical protein [KO:K00889] [EC:2.7.1.68]
AURANDRAFT_19109  hypothetical protein
AURANDRAFT_52498  hypothetical protein [KO:K04646]
AURANDRAFT_65893  hypothetical protein [KO:K23612]
AURANDRAFT_53141  hypothetical protein [KO:K18584]
AURANDRAFT_59181  hypothetical protein [KO:K05757]
AURANDRAFT_24773  hypothetical protein [KO:K05758]
AURANDRAFT_60151  hypothetical protein [KO:K05758]
AURANDRAFT_69782  hypothetical protein [KO:K05756]
AURANDRAFT_60025  hypothetical protein [KO:K05755]
AURANDRAFT_16575  hypothetical protein [KO:K05754]
AURANDRAFT_59274  hypothetical protein [KO:K03283]
AURANDRAFT_59335  hypothetical protein [KO:K03283]
AURANDRAFT_62444  hypothetical protein [KO:K03283]
AURANDRAFT_52275  hypothetical protein [KO:K03283]
AURANDRAFT_36205  heat shock protein 70 [KO:K03283]
AURANDRAFT_27432  hypothetical protein [KO:K18465]
AURANDRAFT_23554  hypothetical protein [KO:K18464]
AURANDRAFT_20953  hypothetical protein [KO:K18463]
AURANDRAFT_51919  hypothetical protein [KO:K10364]
AURANDRAFT_13582  hypothetical protein [KO:K10364]
AURANDRAFT_27922  hypothetical protein [KO:K10365]
AURANDRAFT_59611  hypothetical protein [KO:K18466]
AURANDRAFT_59711  hypothetical protein [KO:K18466]
AURANDRAFT_72490  hypothetical protein [KO:K18468]
AURANDRAFT_16317  hypothetical protein [KO:K17918]
AURANDRAFT_24921  hypothetical protein [KO:K07897]
AURANDRAFT_39255  hypothetical protein [KO:K07897]
AURANDRAFT_59604  hypothetical protein [KO:K07897]
AURANDRAFT_27935  hypothetical protein [KO:K12184]
AURANDRAFT_14209  hypothetical protein [KO:K12188]
AURANDRAFT_35137  hypothetical protein [KO:K12194]
AURANDRAFT_31558  hypothetical protein [KO:K12194]
AURANDRAFT_7138  hypothetical protein [KO:K12193]
AURANDRAFT_18982  hypothetical protein [KO:K12191]
AURANDRAFT_18406  hypothetical protein [KO:K12196]
AURANDRAFT_65108  hypothetical protein [KO:K12199]
AURANDRAFT_25840  hypothetical protein [KO:K12197]
AURANDRAFT_6377  hypothetical protein [KO:K12198]
AURANDRAFT_2963  hypothetical protein [KO:K17917]
AURANDRAFT_30106  hypothetical protein [KO:K04513]
AURANDRAFT_55091  hypothetical protein [KO:K07888]
AURANDRAFT_30918  hypothetical protein [KO:K07888]
AURANDRAFT_70339  hypothetical protein [KO:K07888]
AURANDRAFT_52816  hypothetical protein [KO:K12483]
AURANDRAFT_1674  hypothetical protein [KO:K12483]
AURANDRAFT_1666  hypothetical protein [KO:K12483]
AURANDRAFT_52028  hypothetical protein [KO:K12479]
AURANDRAFT_69836  hypothetical protein [KO:K07901]
AURANDRAFT_59106  hypothetical protein [KO:K07901]
AURANDRAFT_6651  hypothetical protein [KO:K07901]
AURANDRAFT_69665  hypothetical protein [KO:K07901]
AURANDRAFT_6384  hypothetical protein [KO:K07905]
AURANDRAFT_52782  hypothetical protein [KO:K12492]
AURANDRAFT_5450  hypothetical protein [KO:K18441]
AURANDRAFT_72764  hypothetical protein [KO:K18443]
AURANDRAFT_20361  hypothetical protein [KO:K07937]
AURANDRAFT_69741  ADP-ribosylation factor [KO:K07937]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
aaf04070  Phosphatidylinositol signaling system
aaf04130  SNARE interactions in vesicular transport
KO pathway
ko04144   
LinkDB

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