KEGG   PATHWAY: aalb03008
Entry
aalb03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Aedes albopictus (Asian tiger mosquito)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
aalb03008  Ribosome biogenesis in eukaryotes
aalb03008

Organism
Aedes albopictus (Asian tiger mosquito) [GN:aalb]
Gene
109401236  casein kinase II subunit beta isoform X1 [KO:K03115]
109413608  casein kinase II subunit beta isoform X1 [KO:K03115]
109413239  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
109402166  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
109411492  nucleolar protein 6 [KO:K14544]
109621569  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
109400056  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
115260226  ribosomal RNA-processing protein 7 homolog A-like [KO:K14545]
109422328  WD repeat-containing protein 43 [KO:K14546]
109398218  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
109419709  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
109411634  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
109407734  HEAT repeat-containing protein 1 homolog [KO:K14550]
115255088  LOW QUALITY PROTEIN: HEAT repeat-containing protein 1 homolog [KO:K14550]
109398292  LOW QUALITY PROTEIN: WD repeat-containing protein 75 [KO:K14552]
115262144  WD repeat-containing protein 75-like [KO:K14552]
109410213  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109417527  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
115258890  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109410083  WD repeat-containing protein 36 [KO:K14554]
109621499  transducin beta-like protein 3 [KO:K14555]
109397519  LOW QUALITY PROTEIN: transducin beta-like protein 3 [KO:K14555]
109425572  WD repeat-containing protein 3 [KO:K14556]
109430167  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
115264867  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
109424416  periodic tryptophan protein 2 homolog [KO:K14558]
109412374  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
109420186  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
115260243  U3 small nucleolar ribonucleoprotein protein IMP3-like [KO:K14560]
109430272  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109415542  LOW QUALITY PROTEIN: U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109418575  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
109419547  LOW QUALITY PROTEIN: nucleolar protein 56 [KO:K14564]
109417206  nucleolar protein 58-like [KO:K14565]
109397228  nucleolar protein 58 [KO:K14565]
115267263  nucleolar protein 58-like [KO:K14565]
109429944  NHP2-like protein 1 homolog [KO:K12845]
109424491  LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
109422395  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
109432011  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
109431314  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
109418264  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
109422586  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
109404604  rRNA-processing protein FCF1 homolog [KO:K14566]
109425605  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
109411159  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
115267634  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
109417569  ribonuclease 3-like [KO:K03685] [EC:3.1.26.3]
109398887  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
109414265  ribosome biogenesis protein BMS1 homolog [KO:K14569]
109423761  LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog [KO:K14569]
109405592  RNA cytidine acetyltransferase-like [KO:K14521] [EC:2.3.1.-]
109399397  LOW QUALITY PROTEIN: RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
109428430  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
109430515  LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
109407704  ribonucleases P/MRP protein subunit POP1-like [KO:K01164] [EC:3.1.26.5]
109431239  LOW QUALITY PROTEIN: ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
109409115  LOW QUALITY PROTEIN: probable ribonuclease P protein subunit 1 [KO:K03538] [EC:3.1.26.5]
109403237  uncharacterized protein LOC109403237 isoform X1 [KO:K03537] [EC:3.1.26.5]
109407819  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
109419806  ribonuclease P protein subunit p20-like isoform X1 [KO:K14527] [EC:3.1.26.5]
109621874  ribonuclease P protein subunit p30-like [KO:K03539] [EC:3.1.26.5]
109421314  LOW QUALITY PROTEIN: ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
109428399  ribonuclease P protein subunit p40-like isoform X2 [KO:K14530] [EC:3.1.26.5]
109426577  RNA exonuclease 1 isoform X1 [KO:K14570] [EC:3.1.-.-]
109431460  LOW QUALITY PROTEIN: RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
109429095  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
115261465  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
109418764  oligoribonuclease-like isoform X1 [KO:K13288] [EC:3.1.-.-]
109401047  5'-3' exoribonuclease 1-like [KO:K12618] [EC:3.1.13.-]
109408424  LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
109429924  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
109430717  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
109430916  nucleolar GTP-binding protein 1 [KO:K06943]
109409866  nucleolar GTP-binding protein 2 [KO:K14537]
109411867  LOW QUALITY PROTEIN: guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
109412718  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
109408641  LOW QUALITY PROTEIN: nuclear valosin-containing protein-like [KO:K14571]
115254260  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
109407830  midasin [KO:K14572]
109431307  RNA-binding protein 28-like [KO:K14573]
109397889  RNA-binding protein NOB1-like [KO:K11883]
109416119  LOW QUALITY PROTEIN: RNA-binding protein NOB1-like [KO:K11883]
109409292  GTP-binding nuclear protein Ran [KO:K07936]
109621276  GTP-binding nuclear protein Ran [KO:K07936]
109401363  exportin-1-like [KO:K14290]
109425019  60S ribosomal export protein NMD3 [KO:K07562]
109418604  60S ribosomal export protein NMD3 [KO:K07562]
109427121  nuclear RNA export factor 2 [KO:K14284]
109418413  nuclear RNA export factor 1-like [KO:K14284]
109400194  nuclear RNA export factor 2-like [KO:K14284]
109426144  LOW QUALITY PROTEIN: nuclear RNA export factor 1 [KO:K14284]
115254101  nuclear RNA export factor 1-like [KO:K14284]
109402269  NTF2-related export protein [KO:K14285]
109429814  ribosome maturation protein SBDS [KO:K14574]
109398330  ribosome maturation protein SBDS-like [KO:K14574]
109405832  LOW QUALITY PROTEIN: elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
109421934  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
109411747  ATPase family protein 2 homolog [KO:K14575]
109415225  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
109428364  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
115256437  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
109431291  serine/threonine-protein kinase RIO1-like isoform X1 [KO:K07178] [EC:2.7.11.1]
109407710  LOW QUALITY PROTEIN: serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
115258247  LOW QUALITY PROTEIN: serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
109415977  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
115262375  small subunit ribosomal RNA [KO:K01979]
115262374  small subunit ribosomal RNA [KO:K01979]
115262381  large subunit ribosomal RNA [KO:K01982]
115262384  large subunit ribosomal RNA [KO:K01982]
115262383  large subunit ribosomal RNA [KO:K01982]
115270795  5S ribosomal RNA [KO:K01981]
115270794  5S ribosomal RNA [KO:K01981]
115270473  5S ribosomal RNA [KO:K01981]
115262471  small nucleolar RNA U3 [KO:K14483]
115270842  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
aalb03010  Ribosome
KO pathway
ko03008   
LinkDB

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