KEGG   PATHWAY: actz00020
Entry
actz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces sp. 432
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
actz00020  Citrate cycle (TCA cycle)
actz00020

Module
actz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:actz00020]
Other DBs
GO: 0006099
Organism
Actinomyces sp. 432 [GN:actz]
Gene
CWT12_02985  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CWT12_04920  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CWT12_04130  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CWT12_06155  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWT12_03005  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CWT12_03000  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CWT12_10165  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CWT12_03010  succinate dehydrogenase [KO:K00241]
CWT12_10175  cytochrome B [KO:K00241]
CWT12_04560  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CWT12_04375  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CWT12_11750  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CWT12_06160  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
CWT12_04930  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CWT12_04935  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
CWT12_04925  2-oxoacid:acceptor oxidoreductase [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
actz00010  Glycolysis / Gluconeogenesis
actz00053  Ascorbate and aldarate metabolism
actz00061  Fatty acid biosynthesis
actz00190  Oxidative phosphorylation
actz00220  Arginine biosynthesis
actz00250  Alanine, aspartate and glutamate metabolism
actz00280  Valine, leucine and isoleucine degradation
actz00350  Tyrosine metabolism
actz00470  D-Amino acid metabolism
actz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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