KEGG   PATHWAY: ada00020
Entry
ada00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alistipes dispar
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ada00020  Citrate cycle (TCA cycle)
ada00020

Module
ada_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ada00020]
Other DBs
GO: 0006099
Organism
Alistipes dispar [GN:ada]
Gene
A5CPEGH6_24030  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A5CPEGH6_04610  MFS transporter [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A5CPEGH6_23880  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A5CPEGH6_04620  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A5CPEGH6_23870  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A5CPEGH6_23860  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
A5CPEGH6_23890  ferredoxin [KO:K00176] [EC:1.2.7.3]
A5CPEGH6_16960  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A5CPEGH6_16950  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
A5CPEGH6_16970  fumarate reductase [KO:K00241]
A5CPEGH6_09500  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
A5CPEGH6_09460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A5CPEGH6_16090  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A5CPEGH6_20670  oadA; putative oxaloacetate decarboxylase alpha chain [KO:K01960] [EC:6.4.1.1]
A5CPEGH6_13320  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
A5CPEGH6_05630  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ada00010  Glycolysis / Gluconeogenesis
ada00053  Ascorbate and aldarate metabolism
ada00061  Fatty acid biosynthesis
ada00071  Fatty acid degradation
ada00190  Oxidative phosphorylation
ada00220  Arginine biosynthesis
ada00250  Alanine, aspartate and glutamate metabolism
ada00280  Valine, leucine and isoleucine degradation
ada00470  D-Amino acid metabolism
ada00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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