KEGG   PATHWAY: adk00630
Entry
adk00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Alicycliphilus denitrificans K601
Class
Metabolism; Carbohydrate metabolism
Pathway map
adk00630  Glyoxylate and dicarboxylate metabolism
adk00630

Module
adk_M00012  Glyoxylate cycle [PATH:adk00630]
adk_M00621  Glycine cleavage system [PATH:adk00630]
Other DBs
GO: 0046487 0043648
Organism
Alicycliphilus denitrificans K601 [GN:adk]
Gene
Alide2_2832  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Alide2_1512  Acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Alide2_3751  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Alide2_4652  Acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Alide2_4547  Acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Alide2_4446  malate synthase G [KO:K01638] [EC:2.3.3.9]
Alide2_2216  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Alide2_2209  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Alide2_3213  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Alide2_1376  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Alide2_0975  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Alide2_2219  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Alide2_2374  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_2456  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_0157  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1838  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1166  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1511  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_2952  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4336  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4176  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4259  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4115  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_3219  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_3245  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_2457  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Alide2_1719  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Alide2_1233  Isovaleryl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
Alide2_2484  acetyl-CoA carboxylase, biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Alide2_2483  Propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Alide2_3184  Biotin carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
Alide2_2481  methylmalonyl-CoA mutase, large subunit [KO:K01847] [EC:5.4.99.2]
Alide2_0455  D-lactate dehydrogenase (cytochrome) [KO:K00104] [EC:1.1.99.14]
Alide2_0231  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Alide2_0233  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Alide2_1655  Catalase [KO:K03781] [EC:1.11.1.6]
Alide2_4142  Hydroxypyruvate reductase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Alide2_3272  Glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Alide2_2570  Glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
Alide2_1253  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
Alide2_4398  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Alide2_1430  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Alide2_2128  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Alide2_2543  Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
Alide2_2541  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Alide2_0596  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alide2_2417  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alide2_3024  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alide2_2542  glycine cleavage system H protein [KO:K02437]
Alide2_1351  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Alide2_1352  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Alide2_1353  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Alide2_1346  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Alide2_1344  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Alide2_1710  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Alide2_3009  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Alide2_1046  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Alide2_1052  Nitrate reductase [KO:K00123] [EC:1.17.1.9]
Alide2_1045  Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [KO:K22515] [EC:1.17.1.9]
Alide2_1053  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00124]
Alide2_1055  formate dehydrogenase, gamma subunit [KO:K00127]
Alide2_3548  arylformamidase [KO:K07130] [EC:3.5.1.9]
Alide2_0457  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Alide2_1701  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
adk00010  Glycolysis / Gluconeogenesis
adk00020  Citrate cycle (TCA cycle)
adk00030  Pentose phosphate pathway
adk00053  Ascorbate and aldarate metabolism
adk00071  Fatty acid degradation
adk00230  Purine metabolism
adk00250  Alanine, aspartate and glutamate metabolism
adk00260  Glycine, serine and threonine metabolism
adk00620  Pyruvate metabolism
adk00710  Carbon fixation by Calvin cycle
adk00750  Vitamin B6 metabolism
adk00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system