KEGG   PATHWAY: adu00630
Entry
adu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Arachis duranensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
adu00630  Glyoxylate and dicarboxylate metabolism
adu00630

Module
adu_M00012  Glyoxylate cycle [PATH:adu00630]
adu_M00532  Photorespiration [PATH:adu00630]
adu_M00621  Glycine cleavage system [PATH:adu00630]
Other DBs
GO: 0046487 0043648
Organism
Arachis duranensis [GN:adu]
Gene
107477745  isocitrate lyase 1 [KO:K01637] [EC:4.1.3.1]
107494571  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
107463059  LOW QUALITY PROTEIN: acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
107489605  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
107466182  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
107466183  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107473168  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
107468336  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107480540  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
107487600  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107478388  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107468023  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107477593  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107496452  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107458850  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127743918  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
107462018  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107477734  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107487446  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
127744074  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107466024  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
107496137  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
107484423  LOW QUALITY PROTEIN: acetyl-CoA acetyltransferase FG05087, mitochondrial-like [KO:K00626] [EC:2.3.1.9]
107468147  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
107468148  glycolate oxidase isoform X1 [KO:K11517] [EC:1.1.3.15]
107459742  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
107482016  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
107460207  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
107460209  catalase [KO:K03781] [EC:1.11.1.6]
107464259  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
107472978  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
107461481  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
107467410  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
107486102  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
107483041  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
127741124  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
127745596  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
127745650  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
54695951  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
107471479  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 isoform X1 [KO:K01602] [EC:4.1.1.39]
107471485  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 isoform X1 [KO:K01602] [EC:4.1.1.39]
107460132  ribulose bisphosphate carboxylase small subunit, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
107486888  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 isoform X1 [KO:K01602] [EC:4.1.1.39]
107496470  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
107488817  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
107492689  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
107464881  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
107481042  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
107490478  LOW QUALITY PROTEIN: glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
107482677  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
107484818  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
107482294  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
107487228  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
107468159  serine hydroxymethyltransferase 3, chloroplastic isoform X1 [KO:K00600] [EC:2.1.2.1]
107468805  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
107480987  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
107459348  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
107460844  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
107495553  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
107482988  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
107463020  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
107462497  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107487579  glycine cleavage system H protein, mitochondrial [KO:K02437]
107487580  glycine cleavage system H protein, mitochondrial [KO:K02437]
107484118  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
107463758  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
107458200  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
107490785  formate dehydrogenase, mitochondrial isoform X1 [KO:K00122] [EC:1.17.1.9]
107461906  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
107486100  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
107481376  uncharacterized protein LOC107481376 [KO:K01455] [EC:3.5.1.49]
107491144  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
adu00010  Glycolysis / Gluconeogenesis
adu00020  Citrate cycle (TCA cycle)
adu00030  Pentose phosphate pathway
adu00053  Ascorbate and aldarate metabolism
adu00071  Fatty acid degradation
adu00230  Purine metabolism
adu00250  Alanine, aspartate and glutamate metabolism
adu00260  Glycine, serine and threonine metabolism
adu00620  Pyruvate metabolism
adu00710  Carbon fixation by Calvin cycle
adu00750  Vitamin B6 metabolism
adu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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