KEGG   PATHWAY: aec04144
Entry
aec04144                    Pathway                                
Name
Endocytosis - Acromyrmex echinatior (Panamanian leafcutter ant)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
aec04144  Endocytosis
aec04144

Other DBs
GO: 0006897
Organism
Acromyrmex echinatior (Panamanian leafcutter ant) [GN:aec]
Gene
105152793  ADP-ribosylation factor 6 [KO:K07941]
105147238  uncharacterized protein LOC105147238 [KO:K00889] [EC:2.7.1.68]
105149246  phospholipase D2 isoform X1 [KO:K01115] [EC:3.1.4.4]
105146608  dynamin isoform X1 [KO:K01528] [EC:3.6.5.5]
105150769  clathrin heavy chain [KO:K04646]
105146645  AP-2 complex subunit alpha [KO:K11824]
105145654  AP-2 complex subunit mu [KO:K11826]
105154184  AP-2 complex subunit sigma [KO:K11827]
105149442  TGF-beta receptor type-1 isoform X1 [KO:K04674] [EC:2.7.11.30]
105148558  uncharacterized protein LOC105148558 [KO:K04679]
105152835  mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605]
105144059  epidermal growth factor receptor isoform X1 [KO:K04361] [EC:2.7.10.1]
105147047  fibroblast growth factor receptor homolog 1-like isoform X1 [KO:K05093] [EC:2.7.10.1]
105147762  E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K04707] [EC:2.3.2.27]
105148496  endophilin-A isoform X1 [KO:K11247]
105150244  endophilin-B1 isoform X1 [KO:K11248]
105153694  myc box-dependent-interacting protein 1 isoform X1 [KO:K12562]
105145742  epsin-2 isoform X1 [KO:K12471]
105143044  epidermal growth factor receptor substrate 15-like 1 [KO:K12472]
105145446  E3 ubiquitin-protein ligase Nedd-4 [KO:K10591] [EC:2.3.2.26]
105149418  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
105150545  E3 ubiquitin-protein ligase NRDP1 isoform X1 [KO:K11981] [EC:2.3.2.27]
105150276  E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
105147293  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
105148792  low density lipoprotein receptor adapter protein 1-like isoform X1 [KO:K12474]
105150147  protein disabled isoform X1 [KO:K12475]
105153411  G protein-coupled receptor kinase 1 [KO:K00910] [EC:2.7.11.15]
105146542  G protein-coupled receptor kinase 5 [KO:K08291] [EC:2.7.11.16]
105145426  beta-arrestin-1 isoform X1 [KO:K04439]
105149002  arrestin homolog [KO:K04439]
105147867  neural Wiskott-Aldrich syndrome protein isoform X1 [KO:K23612]
105152814  actin-related protein 2 isoform X1 [KO:K17260]
105149190  actin-related protein 3 [KO:K18584]
105148727  actin-related protein 2/3 complex subunit 1A [KO:K05757]
105144605  probable actin-related protein 2/3 complex subunit 2 [KO:K05758]
105146215  actin-related protein 2/3 complex subunit 3 [KO:K05756]
105148144  actin-related protein 2/3 complex subunit 4 [KO:K05755]
105153404  actin-related protein 2/3 complex subunit 5 [KO:K05754]
105149627  heat shock 70 kDa protein cognate 4 [KO:K03283]
105149156  heat shock 70 kDa protein cognate 4 [KO:K03283]
105145816  LOW QUALITY PROTEIN: WASH complex subunit 7 [KO:K18465]
105150127  WASH complex subunit strumpellin [KO:K18464]
105154499  WASH complex subunit FAM21 isoform X1 [KO:K18462]
105148030  WAS protein family homolog 1 [KO:K18461]
105146712  WASH complex subunit CCDC53 [KO:K18463]
105150761  F-actin-capping protein subunit alpha [KO:K10364]
105148464  F-actin-capping protein subunit beta isoform X1 [KO:K10365]
105150342  vacuolar protein sorting-associated protein 29 [KO:K18467]
105151818  vacuolar protein sorting-associated protein 26B-like [KO:K18466]
105149870  LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 35 [KO:K18468]
105153093  sorting nexin-12 isoform X1 [KO:K17918]
105148201  STAM-binding protein-like A [KO:K11866] [EC:3.4.19.12]
105148314  ras-related protein Rab-7a [KO:K07897]
105154858  hepatocyte growth factor-regulated tyrosine kinase substrate [KO:K12182]
105150418  signal transducing adapter molecule 1 [KO:K04705]
105150556  tumor susceptibility gene 101 protein [KO:K12183]
105149704  multivesicular body subunit 12B [KO:K12186]
105143840  vacuolar protein sorting-associated protein 37A [KO:K12185]
105150640  vacuolar protein sorting-associated protein 37B [KO:K12185]
105146950  vacuolar-sorting protein SNF8 [KO:K12188]
105145152  vacuolar protein-sorting-associated protein 36 [KO:K12190]
105152255  vacuolar protein-sorting-associated protein 25 [KO:K12189]
105148597  charged multivesicular body protein 6 [KO:K12195]
105143194  charged multivesicular body protein 4c [KO:K12194]
105148208  charged multivesicular body protein 3 [KO:K12193]
105151399  charged multivesicular body protein 2a [KO:K12191]
105154907  charged multivesicular body protein 7 [KO:K15053]
105150541  vacuolar protein sorting-associated protein 4A [KO:K12196]
105144404  vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199]
105148124  charged multivesicular body protein 1b [KO:K12197]
105154706  charged multivesicular body protein 5 [KO:K12198]
105146692  IST1 homolog isoform X1 [KO:K19476]
105144653  programmed cell death 6-interacting protein [KO:K12200]
105144139  maspardin-like [KO:K19367]
105144388  cation-independent mannose-6-phosphate receptor isoform X1 [KO:K06564]
105150832  sorting nexin-2 isoform X1 [KO:K17917]
105154313  sorting nexin-6 isoform X1 [KO:K17920]
105154274  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
105148010  ras-like GTP-binding protein Rho1 isoform X1 [KO:K04513]
105151851  caveolin-3-like isoform X1 [KO:K12959]
105153420  ras-related protein Rab-5B isoform X1 [KO:K07889]
105149740  rab GTPase-binding effector protein 1 isoform X1 [KO:K12480]
105143472  rabenosyn-5 [KO:K12481]
105151367  RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482]
105144878  EH domain-containing protein 3 [KO:K12483]
105148290  vacuolar protein sorting-associated protein 45 [KO:K12479]
105154116  sorting nexin-4-like [KO:K17919]
105154169  ras-related protein Rab-10 [KO:K07903]
105144888  ras-related protein Rab-8A isoform X1 [KO:K07901]
105150821  ras-related protein Rab-35 [KO:K07876]
105143604  ras-related protein Rab-11A [KO:K07904]
105144167  rab11 family-interacting protein 2 [KO:K12484]
105153142  kinesin heavy chain isoform X1 [KO:K10396]
105144761  rab11 family-interacting protein 4 [KO:K12485]
105151340  partitioning defective 3 homolog [KO:K04237]
105147143  partitioning defective 6 homolog gamma [KO:K06093]
105146410  protein kinase C epsilon type-like [KO:K18952] [EC:2.7.11.13]
105146465  atypical protein kinase C isoform X1 [KO:K06069] [EC:2.7.11.13]
105144891  cdc42 homolog [KO:K04393]
105148050  cdc42 homolog [KO:K04393]
105148760  stromal membrane-associated protein 1 [KO:K12486]
105143583  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488]
105148745  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like [KO:K12489]
105147204  centaurin-gamma-1A isoform X1 [KO:K12491]
105145331  ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492]
105151420  ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493]
105148203  PH and SEC7 domain-containing protein 1 [KO:K12494]
105152366  IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495]
105143214  cytohesin-1 isoform X1 [KO:K18441]
105147066  LOW QUALITY PROTEIN: brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442]
105143351  golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 [KO:K18443]
105152849  ADP-ribosylation factor 1 [KO:K07937]
105150787  ADP-ribosylation factor 2 [KO:K07939]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
aec04070  Phosphatidylinositol signaling system
aec04130  SNARE interactions in vesicular transport
aec04142  Lysosome
aec04350  TGF-beta signaling pathway
KO pathway
ko04144   
LinkDB

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