KEGG   PATHWAY: afd00020
Entry
afd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alistipes finegoldii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afd00020  Citrate cycle (TCA cycle)
afd00020

Module
afd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afd00020]
Other DBs
GO: 0006099
Organism
Alistipes finegoldii [GN:afd]
Gene
Alfi_3291  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alfi_0047  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Alfi_3271  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Alfi_0048  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Alfi_3270  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Alfi_3269  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Alfi_3272  ferredoxin [KO:K00176] [EC:1.2.7.3]
Alfi_2237  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Alfi_2236  succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
Alfi_2238  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Alfi_1174  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
Alfi_0936  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Alfi_1169  malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Alfi_2971  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
Alfi_1235  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Alfi_0159  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afd00010  Glycolysis / Gluconeogenesis
afd00061  Fatty acid biosynthesis
afd00190  Oxidative phosphorylation
afd00220  Arginine biosynthesis
afd00250  Alanine, aspartate and glutamate metabolism
afd00280  Valine, leucine and isoleucine degradation
afd00350  Tyrosine metabolism
afd00470  D-Amino acid metabolism
afd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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