KEGG   PATHWAY: afg00020
Entry
afg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Archaeoglobus fulgidus DSM 8774
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afg00020  Citrate cycle (TCA cycle)
afg00020

Module
afg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afg00020]
afg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afg00020]
Other DBs
GO: 0006099
Organism
Archaeoglobus fulgidus DSM 8774 [GN:afg]
Gene
AFULGI_00014520  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
AFULGI_00007260  isocitrate dehydrogenase, NADP-dependent, prokaryotic type [KO:K00031] [EC:1.1.1.42]
AFULGI_00008300  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AFULGI_00004770  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AFULGI_00008310  Pyruvate:ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AFULGI_00004760  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AFULGI_00004790  Pyruvate:ferredoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
AFULGI_00004780  hypothetical protein [KO:K00176] [EC:1.2.7.3]
AFULGI_00024560  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AFULGI_00017930  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AFULGI_00024570  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AFULGI_00017940  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AFULGI_00007610  succinate dehydrogenase or fumarate reductase [KO:K00239] [EC:1.3.5.1]
AFULGI_00007620  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AFULGI_00007630  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
AFULGI_00007640  Succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
AFULGI_00011960  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region [KO:K01677] [EC:4.2.1.2]
AFULGI_00011950  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
AFULGI_00009390  Malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AFULGI_00002060  acetyl-CoA carboxylase, biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
AFULGI_00013500  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
AFULGI_00019500  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
AFULGI_00023210  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
AFULGI_00023200  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
AFULGI_00019510  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
AFULGI_00019480  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00172] [EC:1.2.7.1]
AFULGI_00023230  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00172] [EC:1.2.7.1]
AFULGI_00023220  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
AFULGI_00019490  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afg00010  Glycolysis / Gluconeogenesis
afg00061  Fatty acid biosynthesis
afg00071  Fatty acid degradation
afg00190  Oxidative phosphorylation
afg00220  Arginine biosynthesis
afg00250  Alanine, aspartate and glutamate metabolism
afg00280  Valine, leucine and isoleucine degradation
afg00350  Tyrosine metabolism
afg00470  D-Amino acid metabolism
afg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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