KEGG   PATHWAY: afu00020
Entry
afu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Archaeoglobus fulgidus DSM 4304
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afu00020  Citrate cycle (TCA cycle)
afu00020

Module
afu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afu00020]
afu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afu00020]
Other DBs
GO: 0006099
Organism
Archaeoglobus fulgidus DSM 4304 [GN:afu]
Gene
AF_1340  citrate synthase (citZ) [KO:K01647] [EC:2.3.3.1]
AF_0647  isocitrate dehydrogenase, NADP (icd) [KO:K00031] [EC:1.1.1.42]
AF_0469  2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AF_0749  2-oxoacid ferredoxin oxidoreductase, subunit alpha (orA) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AF_0468  2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AF_0750  2-oxoacid ferredoxin oxidoreductase, subunit beta (orB) [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AF_0471  2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG) [KO:K00177] [EC:1.2.7.3]
AF_0470  2-ketoglutarate ferredoxin oxidoreductase, subunit delta (korD) [KO:K00176] [EC:1.2.7.3]
AF_2185  succinyl-CoA synthetase, alpha subunit (sucD-2) [KO:K01902] [EC:6.2.1.5]
AF_1539  succinyl-CoA synthetase, alpha subunit (sucD-1) [KO:K01902] [EC:6.2.1.5]
AF_2186  succinyl-CoA synthetase, beta subunit (sucC-2) [KO:K01903] [EC:6.2.1.5]
AF_1540  succinyl-CoA synthetase, beta subunit (sucC-1) [KO:K01903] [EC:6.2.1.5]
AF_0681  succinate dehydrogenase, flavoprotein subunit A (sdhA) [KO:K00239] [EC:1.3.5.1]
AF_0682  succinate dehydrogenase, iron-sulfur subunit B (sdhB) [KO:K00240] [EC:1.3.5.1]
AF_0683  succinate dehydrogenase, subunit C (sdhC) [KO:K00241]
AF_0684  succinate dehydrogenase, subunit D (sdhD) [KO:K00242]
AF_1099  fumarase (fum-2) [KO:K01677] [EC:4.2.1.2]
AF_1098  fumarase (fum-1) [KO:K01678] [EC:4.2.1.2]
AF_0855  L-malate dehydrogenase, NAD+-dependent (mdhA) [KO:K00024] [EC:1.1.1.37]
AF_0220  biotin carboxylase (acc) [KO:K01959] [EC:6.4.1.1]
AF_1701  pyruvate ferredoxin oxidoreductase, subunit alpha (porA) [KO:K00169] [EC:1.2.7.1]
AF_2053  2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) [KO:K00169] [EC:1.2.7.1]
AF_1702  pyruvate ferredoxin oxidoreductase, subunit beta (porB) [KO:K00170] [EC:1.2.7.1]
AF_2052  2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) [KO:K00170] [EC:1.2.7.1]
AF_1699  pyruvate ferredoxin oxidoreductase, subunit gamma (porG) [KO:K00172] [EC:1.2.7.1]
AF_2055  2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) [KO:K00172] [EC:1.2.7.1]
AF_1700  pyruvate ferredoxin oxidoreductase, subunit delta (porD) [KO:K00171] [EC:1.2.7.1]
AF_2054  2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afu00010  Glycolysis / Gluconeogenesis
afu00061  Fatty acid biosynthesis
afu00071  Fatty acid degradation
afu00190  Oxidative phosphorylation
afu00220  Arginine biosynthesis
afu00250  Alanine, aspartate and glutamate metabolism
afu00280  Valine, leucine and isoleucine degradation
afu00350  Tyrosine metabolism
afu00470  D-Amino acid metabolism
afu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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