KEGG   PATHWAY: ahc00020
Entry
ahc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aristaeella hokkaidonensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahc00020  Citrate cycle (TCA cycle)
ahc00020

Module
ahc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahc00020]
ahc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahc00020]
Other DBs
GO: 0006099
Organism
Aristaeella hokkaidonensis [GN:ahc]
Gene
JYE49_10255  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
JYE49_14120  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JYE49_03195  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JYE49_01265  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JYE49_01270  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JYE49_01275  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
JYE49_01260  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
JYE49_02405  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JYE49_05595  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JYE49_00840  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
JYE49_00835  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
JYE49_00850  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
JYE49_00845  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
JYE49_10405  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahc00010  Glycolysis / Gluconeogenesis
ahc00053  Ascorbate and aldarate metabolism
ahc00061  Fatty acid biosynthesis
ahc00190  Oxidative phosphorylation
ahc00220  Arginine biosynthesis
ahc00250  Alanine, aspartate and glutamate metabolism
ahc00280  Valine, leucine and isoleucine degradation
ahc00350  Tyrosine metabolism
ahc00470  D-Amino acid metabolism
ahc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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