KEGG   PATHWAY: aip00630
Entry
aip00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Arachis ipaensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
aip00630  Glyoxylate and dicarboxylate metabolism
aip00630

Module
aip_M00012  Glyoxylate cycle [PATH:aip00630]
aip_M00532  Photorespiration [PATH:aip00630]
aip_M00621  Glycine cleavage system [PATH:aip00630]
Other DBs
GO: 0046487 0043648
Organism
Arachis ipaensis [GN:aip]
Gene
107629956  isocitrate lyase 1 [KO:K01637] [EC:4.1.3.1]
107604913  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
107635233  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
107639048  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
107631476  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
107624813  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
107617411  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
107617412  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107630073  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107642662  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107626268  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
107633125  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107608548  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107611284  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
107632806  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107642540  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
107612826  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107629965  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107609026  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
107636927  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
107624246  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
107612960  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
107623339  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X6 [KO:K11517] [EC:1.1.3.15]
107632053  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
107609665  catalase [KO:K03781] [EC:1.11.1.6]
107609666  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
107617382  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
107612894  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
107622804  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
107618074  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
107638744  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
107635184  phosphoglycolate phosphatase 1B, chloroplastic isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
107640853  uncharacterized protein LOC107640853 [KO:K01601] [EC:4.1.1.39]
107627247  uncharacterized protein LOC107627247 [KO:K01601] [EC:4.1.1.39]
107635732  ribulose bisphosphate carboxylase small chain 1, chloroplastic [KO:K01602] [EC:4.1.1.39]
107623063  ribulose bisphosphate carboxylase small chain 1, chloroplastic [KO:K01602] [EC:4.1.1.39]
107623099  ribulose bisphosphate carboxylase small chain 1, chloroplastic [KO:K01602] [EC:4.1.1.39]
107642447  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
107608681  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
107643316  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
107645553  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
107631250  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
107638560  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
107644115  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
107637831  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
107606105  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
107623162  serine hydroxymethyltransferase 3, chloroplastic isoform X2 [KO:K00600] [EC:2.1.2.1]
107629429  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
107609164  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
107631388  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
107642301  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
107622966  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
107639509  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
107605503  glycine dehydrogenase (decarboxylating), mitochondrial isoform X1 [KO:K00281] [EC:1.4.4.2]
107638635  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
107639123  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
107639585  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107642640  glycine cleavage system H protein, mitochondrial [KO:K02437]
107642641  glycine cleavage system H protein 3, mitochondrial isoform X2 [KO:K02437]
107639275  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
107627745  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
107618024  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
107644029  formate dehydrogenase, mitochondrial isoform X1 [KO:K00122] [EC:1.17.1.9]
107640425  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
107629720  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
107627605  uncharacterized protein LOC107627605 [KO:K01455] [EC:3.5.1.49]
107644845  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
aip00010  Glycolysis / Gluconeogenesis
aip00020  Citrate cycle (TCA cycle)
aip00030  Pentose phosphate pathway
aip00053  Ascorbate and aldarate metabolism
aip00071  Fatty acid degradation
aip00230  Purine metabolism
aip00250  Alanine, aspartate and glutamate metabolism
aip00260  Glycine, serine and threonine metabolism
aip00620  Pyruvate metabolism
aip00710  Carbon fixation by Calvin cycle
aip00750  Vitamin B6 metabolism
aip00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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