KEGG   PATHWAY: amiz00020
Entry
amiz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aminobacterium sp. MB27-C1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amiz00020  Citrate cycle (TCA cycle)
amiz00020

Module
amiz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amiz00020]
amiz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amiz00020]
Other DBs
GO: 0006099
Organism
Aminobacterium sp. MB27-C1 [GN:amiz]
Gene
RBH88_01680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBH88_01685  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
RBH88_02600  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBH88_05060  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBH88_06170  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBH88_07870  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBH88_02605  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBH88_05065  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBH88_06165  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBH88_07865  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBH88_05070  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBH88_06160  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBH88_07860  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBH88_05055  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
RBH88_06175  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
RBH88_07845  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
RBH88_07850  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RBH88_07855  ATP-grasp domain-containing protein [KO:K01903] [EC:6.2.1.5]
RBH88_10270  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RBH88_06415  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
RBH88_01800  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RBH88_01675  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
RBH88_08210  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
RBH88_08205  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
RBH88_08220  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
RBH88_08215  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
RBH88_04750  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amiz00010  Glycolysis / Gluconeogenesis
amiz00061  Fatty acid biosynthesis
amiz00071  Fatty acid degradation
amiz00190  Oxidative phosphorylation
amiz00220  Arginine biosynthesis
amiz00250  Alanine, aspartate and glutamate metabolism
amiz00280  Valine, leucine and isoleucine degradation
amiz00350  Tyrosine metabolism
amiz00470  D-Amino acid metabolism
amiz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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