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Entry
Name
ABC transporters - Aminobacter niigataensis
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
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Organism
Aminobacter niigataensis [GN:
anj ]
Gene
AMD1_2811 cysP; thiosulfate/sulfate ABC transporter periplasmic binding protein CysP [KO:K02048 ]
AMD1_2628 sbp; sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp [KO:K23163 ]
AMD1_2627 cysU; sulfate/thiosulfate ABC transporter inner membrane subunit CysU [KO:K02046 ]
AMD1_2810 cysU; sulfate/thiosulfate ABC transporter inner membrane subunit CysU [KO:K02046 ]
AMD1_2626 cysW; sulfate/thiosulfate ABC transporter inner membrane subunit CysW [KO:K02047 ]
AMD1_2809 cysW; sulfate/thiosulfate ABC transporter inner membrane subunit CysW [KO:K02047 ]
AMD1_0462 tauA; taurine ABC transporter periplasmic binding protein [KO:K15551 ]
AMD1_4717 modA; molybdate ABC transporter periplasmic binding protein [KO:K02020 ]
AMD1_0031 ABC-type thiamine transport system, periplasmic component [KO:K02012 ]
AMD1_1604 phnS; 2-aminoethylphosphonate-binding periplasmic protein [KO:K02012 ]
AMD1_1626 ABC-type thiamine transport system, periplasmic component [KO:K02012 ]
AMD1_1593 potH; Putrescine transport system permease protein PotH [KO:K02011 ]
AMD1_1625 2-aminoethylphosphonate transport system permease PhnU [KO:K02011 ]
AMD1_1369 thiB; thiamine ABC transporter periplasmic binding protein [KO:K02064 ]
AMD1_PA0053 ABC transporter, periplasmic spermidine putrescine-binding protein potD (TC_3.A.1.11.1) [KO:K11069 ]
AMD1_PA0051 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) [KO:K11070 ]
AMD1_2120 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) [KO:K11070 ]
AMD1_4019 ydcV; Inner membrane ABC transporter permease protein YdcV [KO:K11070 ]
AMD1_PA0052 Spermidine Putrescine ABC transporter permease component potB (TC_3.A.1.11.1) [KO:K11071 ]
AMD1_2119 potB; spermidine preferential ABC transporter membrane subunit PotB [KO:K11071 ]
AMD1_4680 potF; putrescine ABC transporter periplasmic binding protein [KO:K11073 ]
AMD1_4677 potI; putrescine ABC transporter membrane subunit PotI [KO:K11074 ]
AMD1_4678 potH; putrescine ABC transporter membrane subunit PotH [KO:K11075 ]
AMD1_1139 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) [KO:K02002 ]
AMD1_2266 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) [KO:K02002 ]
AMD1_1137 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) [KO:K02001 ]
AMD1_2267 opuAB; Glycine betaine transport system permease protein OpuAB [KO:K02001 ]
AMD1_1138 proV; Glycine betaine/proline betaine transport system ATP-binding protein ProV [KO:K02000 ] [EC:7.6.2.9 ]
AMD1_3978 osmF; glycine betaine ABC transporter periplasmic binding protein OsmF [KO:K05845 ]
AMD1_3975 yehW; glycine betaine ABC transporter membrane subunit YehW [KO:K05846 ]
AMD1_3977 yehY; Osmoprotectant uptake system permease protein YehY [KO:K05846 ]
AMD1_0190 smoK; ATP-binding transport protein SmoK [KO:K10111 ] [EC:7.5.2.-]
AMD1_0357 malK; maltose ABC transporter ATP binding subunit [KO:K10111 ] [EC:7.5.2.-]
AMD1_PA0161 ugpC; sn-glycerol 3-phosphate ABC transporter ATP binding subunit [KO:K10112 ] [EC:7.5.2.-]
AMD1_1258 ugpC; sn-glycerol 3-phosphate ABC transporter ATP binding subunit [KO:K10112 ] [EC:7.5.2.-]
AMD1_1999 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K10112 ] [EC:7.5.2.-]
AMD1_4076 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K10112 ] [EC:7.5.2.-]
AMD1_0361 N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein [KO:K10117 ]
AMD1_0359 N-Acetyl-D-glucosamine ABC transport system, permease protein 2 [KO:K10119 ]
AMD1_0193 Various polyols ABC transporter, periplasmic substrate-binding protein [KO:K10227 ]
AMD1_0192 Various polyols ABC transporter, permease component 1 [KO:K10228 ]
AMD1_0191 Various polyols ABC transporter, permease component 2 [KO:K10229 ]
AMD1_0282 aglE; Alpha-glucosides-binding periplasmic protein AglE [KO:K10232 ]
AMD1_0283 aglF; Alpha-glucoside transport system permease protein AglF [KO:K10233 ]
AMD1_0284 aglG; Alpha-glucoside transport system permease protein AglG [KO:K10234 ]
AMD1_3222 mlaE; Putative phospholipid ABC transporter permease protein MlaE [KO:K02066 ]
AMD1_0148 Predicted nucleoside ABC transporter, substrate-binding component [KO:K07335 ]
AMD1_5065 Beta-methylgalactoside transporter inner membrane component [KO:K23535 ]
AMD1_PA0199 ABC-type uncharacterized transport system, permease component [KO:K23535 ]
AMD1_0144 Predicted nucleoside ABC transporter, permease 1 component [KO:K23535 ]
AMD1_1630 ABC-type uncharacterized transport system, permease component [KO:K23535 ]
AMD1_4022 ABC-type uncharacterized transport system, permease component [KO:K23535 ]
AMD1_4031 Beta-methylgalactoside transporter inner membrane component [KO:K23535 ]
AMD1_0143 nupQ; Guanosine ABC transporter permease protein NupQ [KO:K23536 ]
AMD1_3419 tsgC; Putative glucose ABC transporter permease protein TsgC13 [KO:K23536 ]
AMD1_4021 mglC; Galactoside transport system permease protein MglC [KO:K23536 ]
AMD1_4030 Beta-methylgalactoside transporter inner membrane component [KO:K23536 ]
AMD1_PA0202 mglA; Galactose/methyl galactoside import ATP-binding protein MglA [KO:K23537 ]
AMD1_1997 ugpA; sn-glycerol-3-phosphate transport system permease protein UgpA [KO:K17316 ]
AMD1_1998 araQ; L-arabinose transport system permease protein AraQ [KO:K17317 ]
AMD1_1561 xylF; xylose ABC transporter periplasmic binding protein [KO:K10543 ]
AMD1_PA0240 rbsA; ribose ABC transporter ATP binding subunit [KO:K10562 ] [EC:7.5.2.-]
AMD1_2135 mglA; D-galactose/methyl-galactoside ABC transporter ATP binding subunit [KO:K17215 ]
AMD1_4081 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K17324 ]
AMD1_1733 ugpB; sn-glycerol 3-phosphate ABC transporter periplasmic binding protein [KO:K05813 ]
AMD1_1734 ugpA; sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA [KO:K05814 ]
AMD1_1735 ugpE; sn-glycerol 3-phosphate ABC transporter membrane subunit UgpE [KO:K05815 ]
AMD1_1549 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) [KO:K02040 ]
AMD1_1550 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) [KO:K02037 ]
AMD1_1551 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) [KO:K02038 ]
AMD1_2167 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) [KO:K02044 ]
AMD1_2165 Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1) [KO:K02042 ]
AMD1_2166 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) [KO:K02042 ]
AMD1_4621 aapJ; General L-amino acid-binding periplasmic protein AapJ [KO:K09969 ]
AMD1_2532 aapJ; General L-amino acid-binding periplasmic protein AapJ [KO:K09969 ]
AMD1_2619 aapJ; General L-amino acid-binding periplasmic protein AapJ [KO:K09969 ]
AMD1_4168 aapJ; General L-amino acid-binding periplasmic protein AapJ [KO:K09969 ]
AMD1_1364 tcyJ; cystine ABC transporter periplasmic binding protein [KO:K02424 ]
AMD1_4824 yecS; Inner membrane amino-acid ABC transporter permease protein YecS [KO:K10009 ]
AMD1_4357 livJ; branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein [KO:K01999 ]
AMD1_4487 amiC; Aliphatic amidase expression-regulating protein [KO:K01999 ]
AMD1_PA0180 braC; Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [KO:K01999 ]
AMD1_0339 amiC; Aliphatic amidase expression-regulating protein [KO:K01999 ]
AMD1_0686 Benzoate transport, extracellular ligand-binding receptor [KO:K01999 ]
AMD1_1230 livJ; branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein [KO:K01999 ]
AMD1_1332 livK; L-leucine/L-phenylalanine ABC transporter periplasmic binding protein [KO:K01999 ]
AMD1_2510 amiC; Aliphatic amidase expression-regulating protein [KO:K01999 ]
AMD1_3860 braC; Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [KO:K01999 ]
AMD1_1327 livH; branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH [KO:K01997 ]
AMD1_0341 Leucine/isoleucine/valine transporter permease subunit [KO:K01998 ]
AMD1_0470 Leucine/isoleucine/valine transporter permease subunit [KO:K01998 ]
AMD1_0510 Leucine/isoleucine/valine transporter permease subunit [KO:K01998 ]
AMD1_0684 Benzoate transport, inner-membrane translocator precursor [KO:K01998 ]
AMD1_1328 Branched-chain amino acid transport system permease protein livM (TC 3.A.1.4.1) [KO:K01998 ]
AMD1_2512 Leucine/isoleucine/valine transporter permease subunit [KO:K01998 ]
AMD1_PA0177 lptB; Lipopolysaccharide export system ATP-binding protein LptB [KO:K01995 ]
AMD1_0342 livG; branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG [KO:K01995 ]
AMD1_0469 lptB; Lipopolysaccharide export system ATP-binding protein LptB [KO:K01995 ]
AMD1_0512 lptB; Lipopolysaccharide export system ATP-binding protein LptB [KO:K01995 ]
AMD1_0683 livG; High-affinity branched-chain amino acid transport ATP-binding protein LivG [KO:K01995 ]
AMD1_PA0176 livF; branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF [KO:K01996 ]
AMD1_0343 livF; branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF [KO:K01996 ]
AMD1_0468 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG [KO:K01996 ]
AMD1_0508 livF; branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF [KO:K01996 ]
AMD1_0540 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG [KO:K01996 ]
AMD1_0682 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG [KO:K01996 ]
AMD1_1330 livF; branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF [KO:K01996 ]
AMD1_2514 livF; High-affinity branched-chain amino acid transport ATP-binding protein LivF [KO:K01996 ]
AMD1_2333 metQ; L-methionine/D-methionine ABC transporter membrane anchored binding protein [KO:K02073 ]
AMD1_2335 metI; L-methionine/D-methionine ABC transporter membrane subunit [KO:K02072 ]
AMD1_2334 metN; L-methionine/D-methionine ABC transporter ATP binding subunit [KO:K02071 ]
AMD1_4481 livG; branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG [KO:K11962 ]
AMD1_4443 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA (TC 3.A.1.5.1) [KO:K15580 ]
AMD1_0163 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA (TC 3.A.1.5.1) [KO:K15580 ]
AMD1_0167 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA (TC 3.A.1.5.1) [KO:K15580 ]
AMD1_4442 oppB; murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB [KO:K15581 ]
AMD1_0162 oppB; murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB [KO:K15581 ]
AMD1_0161 oppC; Oligopeptide transport system permease protein OppC [KO:K15582 ]
AMD1_PA0229 ddpD; putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD [KO:K15583 ]
AMD1_0643 dppD; dipeptide ABC transporter ATP binding subunit DppD [KO:K15583 ]
AMD1_5022 dppA; dipeptide ABC transporter periplasmic binding protein [KO:K12368 ]
AMD1_2160 dppA; dipeptide ABC transporter periplasmic binding protein [KO:K12368 ]
AMD1_5021 dppB; dipeptide ABC transporter membrane subunit DppB [KO:K12369 ]
AMD1_0645 dppB; Dipeptide transport system permease protein DppB [KO:K12369 ]
AMD1_5020 dppC; dipeptide ABC transporter membrane subunit DppC [KO:K12370 ]
AMD1_5018 dppF; dipeptide ABC transporter ATP binding subunit DppF [KO:K12372 ]
AMD1_5133 yejB; putative oligopeptide ABC transporter membrane subunit YejB [KO:K13894 ]
AMD1_5134 yejE; putative oligopeptide ABC transporter membrane subunit YejE [KO:K13895 ]
AMD1_5137 yejF; putative oligopeptide ABC transporter ATP binding subunit [KO:K13896 ]
AMD1_0288 yfeC; Chelated iron transport system membrane protein YfeC [KO:K11605 ]
AMD1_0287 yfeD; Chelated iron transport system membrane protein YfeD [KO:K11606 ]
AMD1_0289 yfeB; Chelated iron transport system membrane protein YfeB [KO:K11607 ]
AMD1_2849 Lipoprotein releasing system transmembrane protein LolC [KO:K09808 ]
AMD1_2850 lolD; lipoprotein release complex - ATP binding subunit [KO:K09810 ] [EC:7.6.2.-]
AMD1_4220 lptF; Lipopolysaccharide export system permease protein LptF [KO:K07091 ]
AMD1_2298 Uncharacterized ABC transporter ATP-binding protein HI_1051 [KO:K18893 ]
AMD1_2299 Uncharacterized ABC transporter ATP-binding protein HI_1051 [KO:K18893 ]
AMD1_2300 Uncharacterized ABC transporter ATP-binding protein HI_1051 [KO:K18893 ]
AMD1_4346 prsD; Type I secretion system ATP-binding protein PrsD [KO:K12536 ]
AMD1_2146 putative Alkaline protease secretion ATP-binding protein AprD [KO:K12536 ]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
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