KEGG   PATHWAY: ann00020
Entry
ann00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anabaena sp. YBS01
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ann00020  Citrate cycle (TCA cycle)
ann00020

Module
ann_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ann00020]
ann_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ann00020]
Other DBs
GO: 0006099
Organism
Anabaena sp. YBS01 [GN:ann]
Gene
EH233_26330  citrate synthase [KO:K01647] [EC:2.3.3.1]
EH233_20195  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EH233_12020  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EH233_16090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EH233_24065  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
EH233_24060  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EH233_02690  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EH233_22575  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EH233_21920  heterodisulfide reductase [KO:K00241]
EH233_11855  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EH233_01600  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EH233_05275  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
EH233_19125  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
EH233_21125  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
EH233_27270  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ann00010  Glycolysis / Gluconeogenesis
ann00053  Ascorbate and aldarate metabolism
ann00061  Fatty acid biosynthesis
ann00071  Fatty acid degradation
ann00190  Oxidative phosphorylation
ann00220  Arginine biosynthesis
ann00250  Alanine, aspartate and glutamate metabolism
ann00280  Valine, leucine and isoleucine degradation
ann00350  Tyrosine metabolism
ann00470  D-Amino acid metabolism
ann00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system