KEGG   PATHWAY: anv00020
Entry
anv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anaerotignum sp. MB30-C6
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anv00020  Citrate cycle (TCA cycle)
anv00020

Module
anv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anv00020]
anv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anv00020]
Other DBs
GO: 0006099
Organism
Anaerotignum sp. MB30-C6 [GN:anv]
Gene
RBQ60_05310  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
RBQ60_05305  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RBQ60_05300  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
RBQ60_03375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBQ60_05190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBQ60_07760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBQ60_06220  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBQ60_10405  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RBQ60_06225  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBQ60_10400  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RBQ60_06230  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBQ60_10395  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
RBQ60_06215  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
RBQ60_10410  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
RBQ60_04450  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RBQ60_05795  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RBQ60_03370  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
RBQ60_05185  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
RBQ60_09390  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
RBQ60_09385  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
RBQ60_09400  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
RBQ60_09395  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
RBQ60_15070  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
RBQ60_12010  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anv00010  Glycolysis / Gluconeogenesis
anv00061  Fatty acid biosynthesis
anv00071  Fatty acid degradation
anv00190  Oxidative phosphorylation
anv00220  Arginine biosynthesis
anv00250  Alanine, aspartate and glutamate metabolism
anv00280  Valine, leucine and isoleucine degradation
anv00350  Tyrosine metabolism
anv00470  D-Amino acid metabolism
anv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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