KEGG   PATHWAY: anx00020
Entry
anx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aneurinibacillus sp. XH2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anx00020  Citrate cycle (TCA cycle)
anx00020

Module
anx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:anx00020]
anx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:anx00020]
anx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anx00020]
anx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:anx00020]
anx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anx00020]
Other DBs
GO: 0006099
Organism
Aneurinibacillus sp. XH2 [GN:anx]
Gene
ACH33_14735  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACH33_02875  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACH33_02655  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACH33_14730  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACH33_13865  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
ACH33_03880  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACH33_05105  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACH33_06270  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACH33_13025  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACH33_11985  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ACH33_11980  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ACH33_07190  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ACH33_07185  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ACH33_10935  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ACH33_03815  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ACH33_03820  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ACH33_03810  succinate dehydrogenase [KO:K00241]
ACH33_05980  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ACH33_00590  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ACH33_14725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACH33_00305  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ACH33_13450  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ACH33_14370  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ACH33_05090  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ACH33_05095  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ACH33_03875  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
ACH33_05100  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anx00010  Glycolysis / Gluconeogenesis
anx00053  Ascorbate and aldarate metabolism
anx00061  Fatty acid biosynthesis
anx00071  Fatty acid degradation
anx00190  Oxidative phosphorylation
anx00220  Arginine biosynthesis
anx00250  Alanine, aspartate and glutamate metabolism
anx00280  Valine, leucine and isoleucine degradation
anx00350  Tyrosine metabolism
anx00470  D-Amino acid metabolism
anx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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