KEGG   PATHWAY: aol00630
Entry
aol00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium oligotrophicum
Class
Metabolism; Carbohydrate metabolism
Pathway map
aol00630  Glyoxylate and dicarboxylate metabolism
aol00630

Module
aol_M00012  Glyoxylate cycle [PATH:aol00630]
aol_M00621  Glycine cleavage system [PATH:aol00630]
aol_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:aol00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium oligotrophicum [GN:aol]
Gene
S58_37980  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
S58_03540  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
S58_44790  putative acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
S58_13670  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
S58_65690  malate synthase G [KO:K01638] [EC:2.3.3.9]
S58_04110  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
S58_34670  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
S58_70240  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
S58_70250  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
S58_04010  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
S58_07290  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
S58_44980  putative 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
S58_30630  putative thiolase/acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
S58_14510  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
S58_21270  beta-ketoadipyl CoA thiolase [KO:K00626] [EC:2.3.1.9]
S58_21440  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
S58_52100  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
S58_70810  acetyl-CoA acetyltransferase with thiolase domain [KO:K00626] [EC:2.3.1.9]
S58_66950  putative acetyl-CoA acetyltransferase with thiolase domain [KO:K00626] [EC:2.3.1.9]
S58_50490  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
S58_66460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
S58_70800  acetoacetyl-coA reductase [KO:K00023] [EC:1.1.1.36]
S58_55190  putative phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
S58_34260  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
S58_31230  putative acyl-CoA carboxylase biotin-carrying subunit [KO:K01965] [EC:6.4.1.3]
S58_30470  putative propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
S58_49330  methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
S58_49350  methylmalonyl-CoA mutase large subunit [KO:K01847] [EC:5.4.99.2]
S58_63200  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
S58_63100  glycolate oxidase, subunit GlcE [KO:K11472] [EC:1.1.99.14]
S58_63090  glycolate oxidase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
S58_14850  putative catalase [KO:K03781] [EC:1.11.1.6]
S58_00720  putative D-isomer specific 2-hydroxyacid dehydrogenases family protein [KO:K00015] [EC:1.1.1.26]
S58_12590  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
S58_40760  putative 2-hydroxyacid dehydrogenase family protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
S58_53400  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
S58_00270  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
S58_29580  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
S58_40330  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
S58_58790  ribulose bisphosphate carboxylase large chain, RuBisCO large subunit [KO:K01601] [EC:4.1.1.39]
S58_58780  ribulose bisphosphate carboxylase small chain, RuBisCO small subunit [KO:K01602] [EC:4.1.1.39]
S58_05090  putative aminotransferase, class V [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
S58_24200  serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
S58_24210  serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
S58_08000  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
S58_40990  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
S58_33860  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
S58_33170  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
S58_27010  glycine cleavage system P-protein [KO:K00281] [EC:1.4.4.2]
S58_27030  glycine cleavage system T-protein [KO:K00605] [EC:2.1.2.10]
S58_04170  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
S58_35540  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
S58_52970  lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
S58_27020  glycine cleavage system H-protein [KO:K02437]
S58_27510  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
S58_27520  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
S58_66570  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
S58_25910  tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
S58_50780  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
S58_57300  KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
S58_27060  putative formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
S58_27080  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
S58_27090  formate dehydrogenase beta subunit [KO:K00124]
S58_27100  formate dehydrogenase gamma subunit [KO:K00127]
S58_17340  putative para-nitrobenzyl esterase [KO:K01432] [EC:3.5.1.9]
S58_17580  putative serine esterase [KO:K01432] [EC:3.5.1.9]
S58_24400  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
S58_05840  formamide amidohydrolase [KO:K01455] [EC:3.5.1.49]
S58_72510  formamidase [KO:K01455] [EC:3.5.1.49]
S58_27460  putative oxalyl-CoA decarboxylase with thiamin thiamine pyrophosphate (TPP) domain [KO:K01577] [EC:4.1.1.8]
S58_27450  putative formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
aol00010  Glycolysis / Gluconeogenesis
aol00020  Citrate cycle (TCA cycle)
aol00030  Pentose phosphate pathway
aol00053  Ascorbate and aldarate metabolism
aol00071  Fatty acid degradation
aol00230  Purine metabolism
aol00250  Alanine, aspartate and glutamate metabolism
aol00260  Glycine, serine and threonine metabolism
aol00620  Pyruvate metabolism
aol00710  Carbon fixation by Calvin cycle
aol00750  Vitamin B6 metabolism
aol00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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