KEGG   PATHWAY: apol00630
Entry
apol00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ancylobacter polymorphus
Class
Metabolism; Carbohydrate metabolism
Pathway map
apol00630  Glyoxylate and dicarboxylate metabolism
apol00630

Module
apol_M00012  Glyoxylate cycle [PATH:apol00630]
apol_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:apol00630]
Other DBs
GO: 0046487 0043648
Organism
Ancylobacter polymorphus [GN:apol]
Gene
K9D25_19990  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
K9D25_10595  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
K9D25_19995  malate synthase G [KO:K01638] [EC:2.3.3.9]
K9D25_21275  malate synthase G [KO:K01638] [EC:2.3.3.9]
K9D25_08040  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K9D25_15035  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
K9D25_07220  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K9D25_21950  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K9D25_00330  thiolase family protein [KO:K00626] [EC:2.3.1.9]
K9D25_10930  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K9D25_10935  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
K9D25_14935  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
K9D25_22030  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
K9D25_00555  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
K9D25_00550  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
K9D25_00560  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
K9D25_00570  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
K9D25_21485  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
K9D25_03885  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
K9D25_05350  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
K9D25_21490  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
K9D25_03880  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
K9D25_05340  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
K9D25_21495  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
K9D25_03875  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
K9D25_05335  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
K9D25_06665  catalase [KO:K03781] [EC:1.11.1.6]
K9D25_01645  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
K9D25_00070  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
K9D25_00950  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
K9D25_19485  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
K9D25_11280  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
K9D25_13795  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
K9D25_00645  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
K9D25_00640  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
K9D25_12360  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K9D25_19295  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K9D25_00740  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
K9D25_01450  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K9D25_13695  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
K9D25_16400  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K9D25_01660  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K9D25_08025  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K9D25_15195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K9D25_10290  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
K9D25_10285  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
K9D25_10280  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
K9D25_09395  glycerate kinase [KO:K11529] [EC:2.7.1.165]
K9D25_19940  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
K9D25_19960  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
K9D25_10215  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K9D25_07120  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
K9D25_08180  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
K9D25_05635  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
K9D25_05645  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
K9D25_07155  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
K9D25_05650  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
K9D25_07150  fdxH; formate dehydrogenase subunit beta [KO:K00124]
K9D25_05655  formate dehydrogenase subunit gamma [KO:K00127]
K9D25_07145  formate dehydrogenase subunit gamma [KO:K00127]
K9D25_18540  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
K9D25_00500  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
K9D25_01145  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
K9D25_12900  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
K9D25_10310  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
K9D25_22230  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
K9D25_22235  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
K9D25_03945  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
K9D25_10300  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
K9D25_10305  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
apol00010  Glycolysis / Gluconeogenesis
apol00020  Citrate cycle (TCA cycle)
apol00030  Pentose phosphate pathway
apol00053  Ascorbate and aldarate metabolism
apol00071  Fatty acid degradation
apol00230  Purine metabolism
apol00250  Alanine, aspartate and glutamate metabolism
apol00260  Glycine, serine and threonine metabolism
apol00620  Pyruvate metabolism
apol00710  Carbon fixation by Calvin cycle
apol00750  Vitamin B6 metabolism
apol00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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