KEGG   PATHWAY: aprc00630
Entry
aprc00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Abrus precatorius (Indian licorice)
Class
Metabolism; Carbohydrate metabolism
Pathway map
aprc00630  Glyoxylate and dicarboxylate metabolism
aprc00630

Module
aprc_M00012  Glyoxylate cycle [PATH:aprc00630]
aprc_M00532  Photorespiration [PATH:aprc00630]
aprc_M00621  Glycine cleavage system [PATH:aprc00630]
Other DBs
GO: 0046487 0043648
Organism
Abrus precatorius (Indian licorice) [GN:aprc]
Gene
113859247  isocitrate lyase 2 [KO:K01637] [EC:4.1.3.1]
113860838  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
113865999  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
113846022  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
113850512  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
113871160  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
113871346  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
113850251  LOW QUALITY PROTEIN: malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
113846473  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
113859114  malate dehydrogenase 2, peroxisomal isoform X1 [KO:K00026] [EC:1.1.1.37]
113864439  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
113868377  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
113848184  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
113853775  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
113854514  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
113858528  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
113855207  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
113868690  aconitate hydratase 1 isoform X1 [KO:K01681] [EC:4.2.1.3]
113874982  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
113845984  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
113856109  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
113856193  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
113848514  catalase-4-like isoform X1 [KO:K03781] [EC:1.11.1.6]
113865186  catalase-4 isoform X1 [KO:K03781] [EC:1.11.1.6]
113850505  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
113851116  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
113849657  glyoxylate/succinic semialdehyde reductase 1-like isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
113856640  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
113873805  glycerate dehydrogenase isoform X1 [KO:K15893] [EC:1.1.1.29]
113861719  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
113864421  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
113864427  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
54634466  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
113847419  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
113868182  ribulose bisphosphate carboxylase small chain, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
113855732  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
113869499  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
113863103  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
113847015  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
113849686  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
113863316  glutamine synthetase leaf isozyme, chloroplastic isoform X1 [KO:K01915] [EC:6.3.1.2]
113867534  glutamine synthetase PR-2 [KO:K01915] [EC:6.3.1.2]
113846614  serine hydroxymethyltransferase 3, chloroplastic isoform X1 [KO:K00600] [EC:2.1.2.1]
113858533  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
113871645  serine hydroxymethyltransferase 6-like isoform X1 [KO:K00600] [EC:2.1.2.1]
113848060  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
113849537  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
113863740  serine hydroxymethyltransferase 7-like isoform X1 [KO:K00600] [EC:2.1.2.1]
113853888  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
113874905  glycine dehydrogenase (decarboxylating), mitochondrial isoform X1 [KO:K00281] [EC:1.4.4.2]
113864701  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
113874925  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
113847044  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
113847447  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
113852947  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
113858842  glycine cleavage system H protein 2, mitochondrial-like isoform X1 [KO:K02437]
113868740  glycine cleavage system H protein, mitochondrial isoform X1 [KO:K02437]
113857938  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
113853630  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
113867255  formate dehydrogenase, mitochondrial isoform X1 [KO:K00122] [EC:1.17.1.9]
113849671  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
113868577  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
113857473  uncharacterized protein LOC113857473 isoform X1 [KO:K01455] [EC:3.5.1.49]
113867437  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
aprc00010  Glycolysis / Gluconeogenesis
aprc00020  Citrate cycle (TCA cycle)
aprc00030  Pentose phosphate pathway
aprc00053  Ascorbate and aldarate metabolism
aprc00071  Fatty acid degradation
aprc00230  Purine metabolism
aprc00250  Alanine, aspartate and glutamate metabolism
aprc00260  Glycine, serine and threonine metabolism
aprc00620  Pyruvate metabolism
aprc00710  Carbon fixation by Calvin cycle
aprc00750  Vitamin B6 metabolism
aprc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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