KEGG   PATHWAY: arad00630
Entry
arad00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Acidovorax radicis
Class
Metabolism; Carbohydrate metabolism
Pathway map
arad00630  Glyoxylate and dicarboxylate metabolism
arad00630

Module
arad_M00012  Glyoxylate cycle [PATH:arad00630]
arad_M00621  Glycine cleavage system [PATH:arad00630]
Other DBs
GO: 0046487 0043648
Organism
Acidovorax radicis [GN:arad]
Gene
KI609_10165  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
KI609_15120  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
KI609_15705  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
KI609_20995  malate synthase G [KO:K01638] [EC:2.3.3.9]
KI609_15990  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KI609_16025  citrate synthase [KO:K01647] [EC:2.3.3.1]
KI609_22400  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
KI609_17460  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KI609_15975  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KI609_00875  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KI609_03560  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KI609_11045  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
KI609_11680  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KI609_13265  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
KI609_19795  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
KI609_11685  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
KI609_11800  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
KI609_11795  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
KI609_11785  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
KI609_02250  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KI609_01300  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
KI609_01310  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
KI609_06720  catalase [KO:K03781] [EC:1.11.1.6]
KI609_19695  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
KI609_10500  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
KI609_06940  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
KI609_20735  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
KI609_07255  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KI609_08555  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KI609_08710  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KI609_13225  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
KI609_07240  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
KI609_07245  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
KI609_13215  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
KI609_11330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KI609_12520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KI609_12700  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KI609_00250  glycine cleavage system protein H [KO:K02437]
KI609_13220  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KI609_06440  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
KI609_17625  glycerate kinase [KO:K11529] [EC:2.7.1.165]
KI609_14570  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
KI609_16415  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
KI609_04185  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KI609_05385  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
KI609_05415  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
KI609_05380  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
KI609_05420  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
KI609_05430  formate dehydrogenase subunit gamma [KO:K00127]
KI609_06445  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
KI609_17420  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
KI609_02265  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KI609_10910  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
arad00010  Glycolysis / Gluconeogenesis
arad00020  Citrate cycle (TCA cycle)
arad00030  Pentose phosphate pathway
arad00053  Ascorbate and aldarate metabolism
arad00071  Fatty acid degradation
arad00230  Purine metabolism
arad00250  Alanine, aspartate and glutamate metabolism
arad00260  Glycine, serine and threonine metabolism
arad00620  Pyruvate metabolism
arad00710  Carbon fixation by Calvin cycle
arad00750  Vitamin B6 metabolism
arad00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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