KEGG   PATHWAY: aro00630
Entry
aro00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium rhizogenes K599
Class
Metabolism; Carbohydrate metabolism
Pathway map
aro00630  Glyoxylate and dicarboxylate metabolism
aro00630

Module
aro_M00012  Glyoxylate cycle [PATH:aro00630]
aro_M00621  Glycine cleavage system [PATH:aro00630]
aro_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:aro00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium rhizogenes K599 [GN:aro]
Gene
B0909_10585  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
B0909_24225  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
B0909_25765  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
B0909_26460  malate synthase G [KO:K01638] [EC:2.3.3.9]
B0909_25215  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B0909_18955  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
B0909_18960  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
B0909_06440  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B0909_17890  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
B0909_25450  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
B0909_23345  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B0909_18910  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
B0909_11145  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0909_21255  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
B0909_25885  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0909_25890  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
B0909_20755  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
B0909_20745  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
B0909_20720  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
B0909_18480  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
B0909_20750  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
B0909_10185  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
B0909_10175  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
B0909_10170  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
B0909_13105  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
B0909_21670  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
B0909_17525  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
B0909_04935  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B0909_10000  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B0909_06190  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B0909_00875  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0909_12535  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0909_04170  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
B0909_02390  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0909_10615  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0909_19475  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
B0909_07525  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B0909_06240  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
B0909_06230  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
B0909_06380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B0909_25180  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B0909_06235  gcvH; glycine cleavage system protein GcvH [KO:K02437]
B0909_00065  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
B0909_00060  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
B0909_22800  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
B0909_16620  glycerate kinase [KO:K00865] [EC:2.7.1.165]
B0909_22645  glycerate kinase [KO:K11529] [EC:2.7.1.165]
B0909_21655  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
B0909_15095  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B0909_13980  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
B0909_13985  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
B0909_13990  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
B0909_13995  formate dehydrogenase subunit gamma [KO:K00127]
B0909_00625  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B0909_19480  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B0909_16065  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B0909_24410  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
B0909_18405  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
aro00010  Glycolysis / Gluconeogenesis
aro00020  Citrate cycle (TCA cycle)
aro00030  Pentose phosphate pathway
aro00053  Ascorbate and aldarate metabolism
aro00071  Fatty acid degradation
aro00230  Purine metabolism
aro00250  Alanine, aspartate and glutamate metabolism
aro00260  Glycine, serine and threonine metabolism
aro00620  Pyruvate metabolism
aro00710  Carbon fixation by Calvin cycle
aro00750  Vitamin B6 metabolism
aro00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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