KEGG   PATHWAY: asal00630
Entry
asal00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Agrobacterium salinitolerans
Class
Metabolism; Carbohydrate metabolism
Pathway map
asal00630  Glyoxylate and dicarboxylate metabolism
asal00630

Module
asal_M00012  Glyoxylate cycle [PATH:asal00630]
asal_M00621  Glycine cleavage system [PATH:asal00630]
asal_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:asal00630]
Other DBs
GO: 0046487 0043648
Organism
Agrobacterium salinitolerans [GN:asal]
Gene
CFBP5507_01260  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CFBP5507_12515  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CFBP5507_13205  malate synthase G [KO:K01638] [EC:2.3.3.9]
CFBP5507_11960  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFBP5507_23615  citrate synthase [KO:K01647] [EC:2.3.3.1]
CFBP5507_23620  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CFBP5507_05370  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CFBP5507_12220  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CFBP5507_15350  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CFBP5507_20410  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CFBP5507_00710  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CFBP5507_12635  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CFBP5507_12640  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
CFBP5507_21105  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
CFBP5507_21095  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
CFBP5507_21080  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
CFBP5507_19400  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
CFBP5507_21100  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CFBP5507_01515  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
CFBP5507_01520  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
CFBP5507_01525  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
CFBP5507_23855  catE; catalase C [KO:K03781] [EC:1.11.1.6]
CFBP5507_13335  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
CFBP5507_18730  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CFBP5507_21770  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CFBP5507_01680  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CFBP5507_05675  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CFBP5507_06740  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CFBP5507_01235  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
CFBP5507_07470  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CFBP5507_09470  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
CFBP5507_10795  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
CFBP5507_13880  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
CFBP5507_20035  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CFBP5507_03955  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CFBP5507_17640  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CFBP5507_05630  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
CFBP5507_05640  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
CFBP5507_05495  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBP5507_11925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBP5507_05635  gcvH; glycine cleavage system protein GcvH [KO:K02437]
CFBP5507_18560  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CFBP5507_12475  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CFBP5507_23160  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CFBP5507_22820  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CFBP5507_21755  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CFBP5507_16855  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CFBP5507_23630  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
CFBP5507_15515  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
CFBP5507_15520  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CFBP5507_15525  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
CFBP5507_15530  formate dehydrogenase subunit gamma [KO:K00127]
CFBP5507_20040  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CFBP5507_11045  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CFBP5507_17635  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CFBP5507_19310  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
asal00010  Glycolysis / Gluconeogenesis
asal00020  Citrate cycle (TCA cycle)
asal00030  Pentose phosphate pathway
asal00053  Ascorbate and aldarate metabolism
asal00071  Fatty acid degradation
asal00230  Purine metabolism
asal00250  Alanine, aspartate and glutamate metabolism
asal00260  Glycine, serine and threonine metabolism
asal00620  Pyruvate metabolism
asal00710  Carbon fixation by Calvin cycle
asal00750  Vitamin B6 metabolism
asal00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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