KEGG   PATHWAY: asc00020
Entry
asc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acidilobus saccharovorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asc00020  Citrate cycle (TCA cycle)
asc00020

Module
asc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asc00020]
asc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asc00020]
Other DBs
GO: 0006099
Organism
Acidilobus saccharovorans [GN:asc]
Gene
ASAC_1330  Aconitase [KO:K01681] [EC:4.2.1.3]
ASAC_0817  Isocitrate dehydrogenase (NADP+-dependent) [KO:K00031] [EC:1.1.1.42]
ASAC_1063  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide E3 component-like enzyme [KO:K00382] [EC:1.8.1.4]
ASAC_1371  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide E3 component-like enzyme [KO:K00382] [EC:1.8.1.4]
ASAC_0875  Putative 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ASAC_1291  Putative 2-oxoglutarate:ferredoxin oxidoreductase (KGOR), alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ASAC_0874  Putative 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ASAC_1292  Putative 2-oxooglutarate:ferredoxin oxidoreductase (KGOR), beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ASAC_1072  Succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
ASAC_1073  Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
ASAC_1443  Succinate:quinone oxidoreductase, flavoprotein subunit A [KO:K00239] [EC:1.3.5.1]
ASAC_1440  Succinate:quinone oxidoreductase, iron-sulfur subunit B [KO:K00240] [EC:1.3.5.1]
ASAC_1442  Succinate:quinone oxidoreductase, cytochrome b subunit C [KO:K00241]
ASAC_1441  Succinate:quinone oxidoreductase, hydrophobic anchor subunit D [KO:K00242]
ASAC_1277  Fumarase (fumarate hydratase) class I, N-terminal domain protein [KO:K01677] [EC:4.2.1.2]
ASAC_1278  Fumarase (fumarate hydratase) class I, C-terminal domain protein [KO:K01678] [EC:4.2.1.2]
ASAC_0537  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ASAC_0288  Putative L-lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ASAC_0098  Pyruvate:ferredoxin oxidoreductase (POR), alpha subunit [KO:K00169] [EC:1.2.7.1]
ASAC_1054  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), alpha subunit [KO:K00169] [EC:1.2.7.1]
ASAC_0099  Pyruvate:ferredoxin oxidoreductase (POR), beta subunit [KO:K00170] [EC:1.2.7.1]
ASAC_1053  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), beta subunit [KO:K00170] [EC:1.2.7.1]
ASAC_0096  Pyruvate:ferredoxin oxidoreductase (POR) and putative 2-oxoglutarate:ferredoxin oxidoreductase (KGOR), gamma subunitubunit [KO:K00172] [EC:1.2.7.1]
ASAC_1056  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), gamma subunit [KO:K00172] [EC:1.2.7.1]
ASAC_0097  Pyruvate:ferredoxin oxidoreductase (POR) and putative 2-oxoglutarate:ferredoxin oxidoreductase (KGOR), delta subunit [KO:K00171] [EC:1.2.7.1]
ASAC_1055  2-Ketoisovalerate:ferredoxin oxidoreductase (VOR), delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asc00010  Glycolysis / Gluconeogenesis
asc00061  Fatty acid biosynthesis
asc00071  Fatty acid degradation
asc00190  Oxidative phosphorylation
asc00220  Arginine biosynthesis
asc00250  Alanine, aspartate and glutamate metabolism
asc00280  Valine, leucine and isoleucine degradation
asc00350  Tyrosine metabolism
asc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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