KEGG   PATHWAY: asq03430
Entry
asq03430                    Pathway                                
Name
Mismatch repair - Alteromonas stellipolaris LMG 21861
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
asq03430  Mismatch repair
asq03430

Other DBs
GO: 0006298
Organism
Alteromonas stellipolaris LMG 21861 [GN:asq]
Gene
AVL57_05725  DNA mismatch repair protein MutS [KO:K03555]
AVL57_19420  DNA mismatch repair protein [KO:K03572]
AVL57_04095  DNA mismatch repair protein MutH [KO:K03573]
AVL57_02240  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
AVL57_08255  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
AVL57_14610  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
AVL57_14185  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
AVL57_04930  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
AVL57_02385  single-stranded DNA-binding protein [KO:K03111]
AVL57_06070  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AVL57_01225  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AVL57_14020  hypothetical protein [KO:K02343] [EC:2.7.7.7]
AVL57_07560  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AVL57_07970  DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
AVL57_20175  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AVL57_18310  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AVL57_08180  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AVL57_17160  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
AVL57_11715  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
AVL57_03265  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

DBGET integrated database retrieval system