KEGG   PATHWAY: asub03430
Entry
asub03430                   Pathway                                
Name
Mismatch repair - Atlantibacter subterranea
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
asub03430  Mismatch repair
asub03430

Other DBs
GO: 0006298
Organism
Atlantibacter subterranea [GN:asub]
Gene
NLZ15_04395  mutS; DNA mismatch repair protein MutS [KO:K03555]
NLZ15_20020  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
NLZ15_04010  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
NLZ15_21205  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
NLZ15_07910  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
NLZ15_16200  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
NLZ15_16660  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
NLZ15_12930  exoX; exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
NLZ15_03775  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
NLZ15_20555  ssb1; single-stranded DNA-binding protein SSB1 [KO:K03111]
NLZ15_17900  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
NLZ15_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
NLZ15_05670  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
NLZ15_06890  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
NLZ15_08940  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
NLZ15_17750  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
NLZ15_12920  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
NLZ15_02495  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
NLZ15_19135  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
NLZ15_15860  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
NLZ15_21885  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
NLZ15_01615  dam; adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
NLZ15_14915  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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