KEGG   PATHWAY: ave00020
Entry
ave00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Archaeoglobus veneficus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ave00020  Citrate cycle (TCA cycle)
ave00020

Module
ave_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ave00020]
Other DBs
GO: 0006099
Organism
Archaeoglobus veneficus [GN:ave]
Gene
Arcve_2096  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Arcve_1311  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Arcve_1442  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Arcve_1441  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Arcve_1885  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Arcve_1534  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
Arcve_0062  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Arcve_0797  Pyruvate synthase [KO:K00169] [EC:1.2.7.1]
Arcve_1207  Pyruvate synthase [KO:K00169] [EC:1.2.7.1]
Arcve_1545  Pyruvate synthase [KO:K00169] [EC:1.2.7.1]
Arcve_1208  Pyruvate synthase [KO:K00170] [EC:1.2.7.1]
Arcve_1546  Pyruvate synthase [KO:K00170] [EC:1.2.7.1]
Arcve_0796  Pyruvate synthase [KO:K00170] [EC:1.2.7.1]
Arcve_1205  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Arcve_0802  pyruvate ferredoxin oxidoreductase subunit gamma/delta [KO:K00172] [EC:1.2.7.1]
Arcve_0801  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Arcve_1543  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Arcve_1544  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Arcve_1206  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ave00010  Glycolysis / Gluconeogenesis
ave00061  Fatty acid biosynthesis
ave00071  Fatty acid degradation
ave00190  Oxidative phosphorylation
ave00220  Arginine biosynthesis
ave00250  Alanine, aspartate and glutamate metabolism
ave00280  Valine, leucine and isoleucine degradation
ave00350  Tyrosine metabolism
ave00470  D-Amino acid metabolism
ave00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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