KEGG   PATHWAY: avi00630
Entry
avi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Allorhizobium ampelinum
Class
Metabolism; Carbohydrate metabolism
Pathway map
avi00630  Glyoxylate and dicarboxylate metabolism
avi00630

Module
avi_M00012  Glyoxylate cycle [PATH:avi00630]
avi_M00621  Glycine cleavage system [PATH:avi00630]
avi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:avi00630]
Other DBs
GO: 0046487 0043648
Organism
Allorhizobium ampelinum [GN:avi]
Gene
Avi_0816  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Avi_3985  AMP-(fatty) acid ligase protein [KO:K01895] [EC:6.2.1.1]
Avi_4377  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Avi_0057  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
Avi_4129  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Avi_2563  cisY; citrate synthase [KO:K01647] [EC:2.3.3.1]
Avi_4187  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Avi_0598  acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Avi_4344  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Avi_7411  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Avi_4345  phbB; acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis [KO:K00023] [EC:1.1.1.36]
Avi_1733  gloA; lactoylglutathione lyase [KO:K05606] [EC:5.1.99.1]
Avi_5683  accC; acetyl-CoA carboxylase biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Avi_5680  propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Avi_5845  biotin carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Avi_5687  mutA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Avi_5786  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
Avi_7674  oxidoreductase [KO:K00104] [EC:1.1.99.14]
Avi_7676  FAD dependent oxidoreductase [KO:K00104] [EC:1.1.99.14]
Avi_5788  glcE; glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
Avi_5789  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
Avi_5326  catE; catalase C [KO:K03781] [EC:1.11.1.6]
Avi_0314  D-isomer specific 2-hydroxyacid dehydrogenases family protein [KO:K00015] [EC:1.1.1.26]
Avi_5861  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Avi_0248  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Avi_2080  gph; phosphoglycolate phosphatase bacterial [KO:K01091] [EC:3.1.3.18]
Avi_0898  phosphatase [KO:K01091] [EC:3.1.3.18]
Avi_8278  virP [KO:K01091] [EC:3.1.3.18]
Avi_2262  hydrolase [KO:K01091] [EC:3.1.3.18]
Avi_0800  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avi_1406  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avi_2375  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avi_3344  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avi_5752  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avi_1610  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Avi_3366  Glycine/serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Avi_2252  gcvP; glycine cleavage system protein P2 [KO:K00281] [EC:1.4.4.2]
Avi_2254  gcvT; glycine cleavage system T protein aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Avi_2120  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Avi_4116  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Avi_2253  gcvH; glycine cleavage system component H [KO:K02437]
Avi_5720  oxidoredutase [KO:K00042] [EC:1.1.1.60]
Avi_5035  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Avi_9119  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Avi_0477  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Avi_9120  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Avi_3816  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Avi_4095  fdsD; NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
Avi_4097  fdhA; formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Avi_4098  nuoF; NADH dehydrogenase I chain F [KO:K00124]
Avi_4099  nuoE; NADH dehydrogenase I chain E [KO:K00127]
Avi_6011  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Avi_5655  amidohydrolase [KO:K01455] [EC:3.5.1.49]
Avi_5957  hutG; N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
avi00010  Glycolysis / Gluconeogenesis
avi00020  Citrate cycle (TCA cycle)
avi00030  Pentose phosphate pathway
avi00053  Ascorbate and aldarate metabolism
avi00071  Fatty acid degradation
avi00230  Purine metabolism
avi00250  Alanine, aspartate and glutamate metabolism
avi00260  Glycine, serine and threonine metabolism
avi00620  Pyruvate metabolism
avi00710  Carbon fixation by Calvin cycle
avi00750  Vitamin B6 metabolism
avi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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