KEGG   PATHWAY: axe03430
Entry
axe03430                    Pathway                                
Name
Mismatch repair - Alloalcanivorax xenomutans
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
axe03430  Mismatch repair
axe03430

Other DBs
GO: 0006298
Organism
Alloalcanivorax xenomutans [GN:axe]
Gene
P40_14495  DNA mismatch repair protein MutS [KO:K03555]
P40_03625  mutL; DNA mismatch repair protein [KO:K03572]
P40_21300  uvrD; DNA-dependent helicase II [KO:K03657] [EC:5.6.2.4]
P40_05750  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
P40_04090  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
P40_07030  ssDNA exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
P40_10260  single-stranded DNA-binding protein [KO:K03111]
P40_17355  single-stranded DNA-binding protein [KO:K03111]
P40_18075  single-stranded DNA-binding protein [KO:K03111]
P40_09230  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
P40_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
P40_13970  AAA family ATPase [KO:K02343] [EC:2.7.7.7]
P40_05135  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
P40_13165  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
P40_11365  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
P40_04155  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
P40_17715  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
P40_08410  aromatic ring-opening dioxygenase LigA [KO:K01972] [EC:6.5.1.2]
P40_17295  DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
P40_10330  DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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