KEGG   PATHWAY: axx00900
Entry
axx00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Achromobacter xylosoxidans NCTC10807
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
axx00900  Terpenoid backbone biosynthesis
axx00900

Other DBs
GO: 0009240 0016091
Organism
Achromobacter xylosoxidans NCTC10807 [GN:axx]
Gene
ERS451415_01711  dxs_1; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K01662] [EC:2.2.1.7]
ERS451415_02486  dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase [KO:K00099] [EC:1.1.1.267]
ERS451415_01390  ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [KO:K00991] [EC:2.7.7.60]
ERS451415_05365  ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [KO:K00919] [EC:2.7.1.148]
ERS451415_01391  ispF; 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase [KO:K01770] [EC:4.6.1.12]
ERS451415_01979  ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [KO:K03526] [EC:1.17.7.1 1.17.7.3]
ERS451415_01664  ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [KO:K03527] [EC:1.17.7.4]
ERS451415_04113  thlA_2; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ERS451415_02304  Probable acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ERS451415_04665  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
ERS451415_00117  thlA_1; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ERS451415_04373  phbA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ERS451415_03291  pcaF_1; Beta-ketoadipyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
ERS451415_04106  pcaF_3; Beta-ketoadipyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
ERS451415_00110  thiolase [KO:K00626] [EC:2.3.1.9]
ERS451415_03082  mvaA; 3-hydroxy-3-methylglutaryl-coenzyme A reductase [KO:K00054] [EC:1.1.1.88]
ERS451415_05678  bsdB; Phenolic acid decarboxylase subunit B [KO:K03186] [EC:2.5.1.129]
ERS451415_01710  ispA; Farnesyl diphosphate synthase [KO:K00795] [EC:2.5.1.1 2.5.1.10]
ERS451415_05825  ispB; Octaprenyl-diphosphate synthase [KO:K02523] [EC:2.5.1.90]
ERS451415_02484  uppS; Undecaprenyl pyrophosphate synthase [KO:K00806] [EC:2.5.1.31]
ERS451415_01644  htpX_1; Protease HtpX [KO:K06013] [EC:3.4.24.84]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
axx00010  Glycolysis / Gluconeogenesis
axx00100  Steroid biosynthesis
axx00130  Ubiquinone and other terpenoid-quinone biosynthesis
axx00270  Cysteine and methionine metabolism
axx00906  Carotenoid biosynthesis
KO pathway
ko00900   
LinkDB

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