KEGG   COMPOUND: C00129
Entry
C00129                      Compound                               
Name
Isopentenyl diphosphate;
Delta3-Isopentenyl diphosphate;
Delta3-Methyl-3-butenyl diphosphate;
3-Methylbut-3-en-1-yl diphosphate
Formula
C5H12O7P2
Exact mass
246.0058
Mol weight
246.09
Structure
Reaction
R01121 R01123 R01658 R01659 R02003 R02061 R03917 R05555
R05556 R05611 R05612 R05613 R05884 R06447 R07267 R07269
R07475 R08400 R08528 R08747 R08748 R08749 R08750 R08751
R08752 R08753 R09244 R09245 R09246 R09247 R09248 R09249
R09250 R09251 R09633 R09730 R09731 R10093 R11940 R12638
R12639 R13127 R13302
Pathway
map00900  Terpenoid backbone biosynthesis
map00997  Biosynthesis of various other secondary metabolites
map00998  Biosynthesis of various antibiotics
map01060  Biosynthesis of plant secondary metabolites
map01062  Biosynthesis of terpenoids and steroids
map01070  Biosynthesis of plant hormones
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map04216  Ferroptosis
Module
M00095  C5 isoprenoid biosynthesis, mevalonate pathway
M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway
M00364  C10-C20 isoprenoid biosynthesis, bacteria
M00365  C10-C20 isoprenoid biosynthesis, archaea
M00366  C10-C20 isoprenoid biosynthesis, plants
M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
M00849  C5 isoprenoid biosynthesis, mevalonate pathway, archaea
M00921  Cyclooctatin biosynthesis, dimethylallyl-PP + isopentenyl-PP => cyclooctatin
Enzyme
1.17.7.4        2.5.1.1         2.5.1.10        2.5.1.20        
2.5.1.28        2.5.1.29        2.5.1.30        2.5.1.31        
2.5.1.68        2.5.1.81        2.5.1.82        2.5.1.83        
2.5.1.84        2.5.1.85        2.5.1.86        2.5.1.87        
2.5.1.88        2.5.1.89        2.5.1.90        2.5.1.91        
2.5.1.92        2.5.1.142       2.5.1.158       2.5.1.-         
2.7.4.26        3.6.1.76        4.1.1.33        5.3.3.2
Brite
Lipids [BR:br08002]
 PR  Prenol lipids
  PR01 Isoprenoids
   PR0101 C5 isoprenoids (hemiterpenes)
    C00129  Isopentenyl diphosphate
Other DBs
CAS: 358-71-4
PubChem: 3429
ChEBI: 16584
LIPIDMAPS: LMPR01010008
KNApSAcK: C00000848
PDB-CCD: IPE[PDBj]
NIKKAJI: J38.556E
LinkDB
KCF data

ATOM        14
            1   P1b P    22.4876  -17.2282
            2   O2c O    23.8598  -17.2220
            3   O2b O    22.4687  -15.7286
            4   O1c O    22.4623  -18.7968
            5   O1c O    21.1091  -17.2282
            6   P1b P    25.2321  -17.2220
            7   C1b C    21.2989  -15.0331
            8   O1c O    25.2257  -15.7097
            9   O1c O    25.2130  -18.8345
            10  O1c O    26.6043  -17.2220
            11  C1b C    20.1100  -15.7224
            12  C2c C    18.9212  -15.0331
            13  C1a C    17.7261  -15.7224
            14  C2a C    18.9212  -13.7308
BOND        13
            1     1   2 1
            2     1   3 1
            3     1   4 1
            4     1   5 2
            5     2   6 1
            6     3   7 1
            7     6   8 1
            8     6   9 1
            9     6  10 2
            10    7  11 1
            11   11  12 1
            12   12  13 1
            13   12  14 2

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