KEGG   PATHWAY: azi00630
Entry
azi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Azoarcus sp. CIB
Class
Metabolism; Carbohydrate metabolism
Pathway map
azi00630  Glyoxylate and dicarboxylate metabolism
azi00630

Module
azi_M00012  Glyoxylate cycle [PATH:azi00630]
azi_M00621  Glycine cleavage system [PATH:azi00630]
Other DBs
GO: 0046487 0043648
Organism
Azoarcus sp. CIB [GN:azi]
Gene
AzCIB_3289  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AzCIB_1325  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AzCIB_0750  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AzCIB_1014  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AzCIB_3999  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AzCIB_3263  malate synthase G [KO:K01638] [EC:2.3.3.9]
AzCIB_1872  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AzCIB_1865  citrate synthase [KO:K01647] [EC:2.3.3.1]
AzCIB_2920  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AzCIB_2919  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AzCIB_0429  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AzCIB_2515  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AzCIB_2519  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AzCIB_2936  beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
AzCIB_2730  beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
AzCIB_4488  putative thiolase [KO:K00626] [EC:2.3.1.9]
AzCIB_4205  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
AzCIB_1781  beta-oxoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
AzCIB_3060  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
AzCIB_3061  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
AzCIB_3317  putative maoC-like dehydratase [KO:K17865] [EC:4.2.1.55]
AzCIB_4089  Protein PCCA-1 [KO:K01965] [EC:6.4.1.3]
AzCIB_4090  propionyl-CoA carboxylase beta chain, mitochondrial precursor [KO:K01966] [EC:6.4.1.3 2.1.3.15]
AzCIB_4092  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AzCIB_1786  methylmalonyl-CoA mutase C-terminal domain-containing protein [KO:K01849] [EC:5.4.99.2]
AzCIB_1787  methylmalonyl-CoA mutase subunit alpha [KO:K01848] [EC:5.4.99.2]
AzCIB_3337  glycolate oxidase (FAD-linked subunit) oxidoreductase protein [KO:K00104] [EC:1.1.99.14]
AzCIB_3335  glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
AzCIB_3334  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
AzCIB_1935  haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
AzCIB_1223  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
AzCIB_2809  hydrolase [KO:K01091] [EC:3.1.3.18]
AzCIB_3745  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AzCIB_1169  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AzCIB_0885  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AzCIB_2134  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AzCIB_1166  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AzCIB_2633  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AzCIB_1172  glycine cleavage T-protein [KO:K00605] [EC:2.1.2.10]
AzCIB_1862  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AzCIB_0982  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AzCIB_2286  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AzCIB_1165  glycine cleavage system protein H [KO:K02437]
AzCIB_2632  glycine cleavage system protein H [KO:K02437]
AzCIB_3982  3-hydroxyisobutyrate dehydrogenase [KO:K00042] [EC:1.1.1.60]
AzCIB_3435  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
AzCIB_1262  4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AzCIB_0059  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
AzCIB_4593  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
AzCIB_4594  formate dehydrogenase, NAD(P) reducing, beta subunit [KO:K22515] [EC:1.17.1.9]
AzCIB_0060  formate dehydrogenase iron-sulfur subunit [KO:K00124]
AzCIB_0062  putative formate dehydrogenase, gamma subunit [KO:K00127]
AzCIB_2150  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AzCIB_4360  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
azi00010  Glycolysis / Gluconeogenesis
azi00020  Citrate cycle (TCA cycle)
azi00030  Pentose phosphate pathway
azi00053  Ascorbate and aldarate metabolism
azi00071  Fatty acid degradation
azi00230  Purine metabolism
azi00250  Alanine, aspartate and glutamate metabolism
azi00260  Glycine, serine and threonine metabolism
azi00620  Pyruvate metabolism
azi00710  Carbon fixation by Calvin cycle
azi00750  Vitamin B6 metabolism
azi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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