KEGG   PATHWAY: baca03430
Entry
baca03430                   Pathway                                
Name
Mismatch repair - Bacillus sp. S3
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
baca03430  Mismatch repair
baca03430

Other DBs
GO: 0006298
Organism
Bacillus sp. S3 [GN:baca]
Gene
FAY30_09555  mutS; DNA mismatch repair protein MutS [KO:K03555]
FAY30_14905  endonuclease MutS2 [KO:K07456]
FAY30_18110  endonuclease MutS2 [KO:K07456]
FAY30_09560  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
FAY30_01985  pcrA; DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
FAY30_07770  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
FAY30_11620  DNA helicase [KO:K03657] [EC:5.6.2.4]
FAY30_12010  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
FAY30_13750  hypothetical protein [KO:K03657] [EC:5.6.2.4]
FAY30_14625  helicase [KO:K03657] [EC:5.6.2.4]
FAY30_16645  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
FAY30_16640  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
FAY30_17660  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
FAY30_25815  ssb; single-stranded DNA-binding protein [KO:K03111]
FAY30_26070  single-stranded DNA-binding protein [KO:K03111]
FAY30_18330  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
FAY30_09220  PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
FAY30_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FAY30_26460  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FAY30_00120  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
FAY30_17340  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
FAY30_00190  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
FAY30_05235  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
FAY30_01990  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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