KEGG   PATHWAY: bagr00020
Entry
bagr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevibacillus agri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bagr00020  Citrate cycle (TCA cycle)
bagr00020

Module
bagr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bagr00020]
bagr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bagr00020]
bagr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bagr00020]
bagr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bagr00020]
bagr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bagr00020]
Other DBs
GO: 0006099
Organism
Brevibacillus agri [GN:bagr]
Gene
BA6348_22005  citrate synthase [KO:K01647] [EC:2.3.3.1]
BA6348_03570  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BA6348_00325  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BA6348_09920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
BA6348_22000  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BA6348_17270  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BA6348_13950  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BA6348_14975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BA6348_03505  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BA6348_13660  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BA6348_13665  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BA6348_13155  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BA6348_13150  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BA6348_00715  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BA6348_20435  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BA6348_20430  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BA6348_20440  succinate dehydrogenase [KO:K00241]
BA6348_18340  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BA6348_04030  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BA6348_21995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BA6348_25025  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BA6348_04375  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BA6348_03410  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BA6348_10540  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BA6348_07175  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BA6348_13935  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BA6348_13940  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BA6348_03500  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BA6348_13945  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bagr00010  Glycolysis / Gluconeogenesis
bagr00053  Ascorbate and aldarate metabolism
bagr00061  Fatty acid biosynthesis
bagr00071  Fatty acid degradation
bagr00190  Oxidative phosphorylation
bagr00220  Arginine biosynthesis
bagr00250  Alanine, aspartate and glutamate metabolism
bagr00280  Valine, leucine and isoleucine degradation
bagr00350  Tyrosine metabolism
bagr00470  D-Amino acid metabolism
bagr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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