KEGG   PATHWAY: bamf00630
Entry
bamf00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bacillus amyloliquefaciens LFB112
Class
Metabolism; Carbohydrate metabolism
Pathway map
bamf00630  Glyoxylate and dicarboxylate metabolism
bamf00630

Module
bamf_M00621  Glycine cleavage system [PATH:bamf00630]
Other DBs
GO: 0046487 0043648
Organism
Bacillus amyloliquefaciens LFB112 [GN:bamf]
Gene
U722_14360  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
U722_14495  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
U722_14185  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
U722_14195  citrate synthase [KO:K01647] [EC:2.3.3.1]
U722_04895  citrate synthase [KO:K01647] [EC:2.3.3.1]
U722_12210  citrate synthase [KO:K01647] [EC:2.3.3.1]
U722_09430  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
U722_05350  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
U722_12225  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
U722_12105  hypothetical protein [KO:K05606] [EC:5.1.99.1]
U722_12100  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
U722_13960  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
U722_13965  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
U722_04570  catalase [KO:K03781] [EC:1.11.1.6]
U722_19135  catalase [KO:K03781] [EC:1.11.1.6]
U722_19270  katE; hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
U722_17130  2-ketogluconate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
U722_09165  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
U722_18290  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
U722_12460  glycine dehydrogenase subunit 1 [KO:K00282] [EC:1.4.4.2]
U722_12455  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
U722_12465  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
U722_12170  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
U722_07685  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
U722_04155  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
U722_16075  glycine cleavage system protein H [KO:K02437]
U722_00095  glycerate kinase [KO:K00865] [EC:2.7.1.165]
U722_03015  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
U722_09515  ketohydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
U722_11290  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
U722_16325  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
U722_06365  oxidoreductase [KO:K00123] [EC:1.17.1.9]
U722_13200  oxidoreductase [KO:K00123] [EC:1.17.1.9]
U722_06900  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bamf00010  Glycolysis / Gluconeogenesis
bamf00020  Citrate cycle (TCA cycle)
bamf00030  Pentose phosphate pathway
bamf00053  Ascorbate and aldarate metabolism
bamf00071  Fatty acid degradation
bamf00230  Purine metabolism
bamf00250  Alanine, aspartate and glutamate metabolism
bamf00260  Glycine, serine and threonine metabolism
bamf00620  Pyruvate metabolism
bamf00710  Carbon fixation by Calvin cycle
bamf00750  Vitamin B6 metabolism
bamf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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