KEGG   PATHWAY: baml00630
Entry
baml00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bacillus velezensis UCMB5036
Class
Metabolism; Carbohydrate metabolism
Pathway map
baml00630  Glyoxylate and dicarboxylate metabolism
baml00630

Module
baml_M00621  Glycine cleavage system [PATH:baml00630]
Other DBs
GO: 0046487 0043648
Organism
Bacillus velezensis UCMB5036 [GN:baml]
Gene
BAM5036_2591  ytcI; putative acyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
BAM5036_2618  acsA; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BAM5036_2556  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAM5036_0872  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BAM5036_2558  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
BAM5036_2165  mmgD; 2-methylcitrate synthase/citrate synthase III [KO:K01647] [EC:2.3.3.1]
BAM5036_1719  citB; aconitate hydratase (aconitase) [KO:K01681] [EC:4.2.1.3]
BAM5036_0956  yhfS; putative acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BAM5036_2168  mmgA; degradative acetoacetyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
BAM5036_2146  yqjC; putative Methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
BAM5036_2145  yqjD; putative propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BAM5036_2515  glcD; glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
BAM5036_2516  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BAM5036_0810  katA; vegetative catalase 1 [KO:K03781] [EC:1.11.1.6]
BAM5036_3537  katE; catalase 2 [KO:K03781] [EC:1.11.1.6]
BAM5036_3514  katX; major catalase in spores [KO:K03781] [EC:1.11.1.6]
BAM5036_3105  yvcT; putative 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BAM5036_1670  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BAM5036_3336  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BAM5036_2210  gcvPA; glycine decarboxylase (subunit 1) (glycine cleavage system protein P) [KO:K00282] [EC:1.4.4.2]
BAM5036_2209  gcvPB; glycine decarboxylase (subunit 2) (glycine cleavage system protein P) [KO:K00283] [EC:1.4.4.2]
BAM5036_2211  gcvT; aminomethyltransferase (glycine cleavage system protein T) [KO:K00605] [EC:2.1.2.10]
BAM5036_0744  acoL; acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAM5036_1383  pdhD; dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BAM5036_2157  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAM5036_2903  yusH; putative glycine cleavage system protein H [KO:K02437]
BAM5036_0015  glxK; Glycerate kinase [KO:K00865] [EC:2.7.1.165]
BAM5036_0535  ycsA; putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BAM5036_1736  kdgA; KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase] [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BAM5036_1994  oxdC; oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
BAM5036_2951  oxdC; oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
BAM5036_2372  yrhE; putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
BAM5036_1133  yjgC; putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
BAM5036_1227  purU; formyltetrahydrofolate hydrolase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
baml00010  Glycolysis / Gluconeogenesis
baml00020  Citrate cycle (TCA cycle)
baml00030  Pentose phosphate pathway
baml00053  Ascorbate and aldarate metabolism
baml00071  Fatty acid degradation
baml00230  Purine metabolism
baml00250  Alanine, aspartate and glutamate metabolism
baml00260  Glycine, serine and threonine metabolism
baml00620  Pyruvate metabolism
baml00710  Carbon fixation by Calvin cycle
baml00750  Vitamin B6 metabolism
baml00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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