KEGG   PATHWAY: bamp03430
Entry
bamp03430                   Pathway                                
Name
Mismatch repair - Bacillus velezensis AS43.3
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bamp03430  Mismatch repair
bamp03430

Other DBs
GO: 0006298
Organism
Bacillus velezensis AS43.3 [GN:bamp]
Gene
B938_08750  DNA mismatch repair protein MutS [KO:K03555]
B938_13255  recombination and DNA strand exchange inhibitor protein [KO:K07456]
B938_08755  mutL; DNA mismatch repair protein [KO:K03572]
B938_03255  PcrA [KO:K03657] [EC:5.6.2.4]
B938_15675  DNA helicase II / ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
B938_05760  hypothetical protein [KO:K03657] [EC:5.6.2.4]
B938_11705  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
B938_11700  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
B938_12780  single-stranded-DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
B938_19465  single-strand DNA-binding protein [KO:K03111]
B938_17200  single-stranded DNA-binding like protein [KO:K03111]
B938_13600  dnaE; DNA polymerase III DnaE [KO:K02337] [EC:2.7.7.7]
B938_08520  polC; DNA polymerase III PolC [KO:K03763] [EC:2.7.7.7]
B938_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
B938_00105  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
B938_12320  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
B938_00165  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
B938_03260  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
B938_05940  Site-specific DNA methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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