KEGG   PATHWAY: barc00020
Entry
barc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Bathyarchaeota archaeon BA1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
barc00020  Citrate cycle (TCA cycle)
barc00020

Module
barc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:barc00020]
Other DBs
GO: 0006099
Organism
Candidatus Bathyarchaeota archaeon BA1 [GN:barc]
Gene
AOA65_1041  vorB; Ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AOA65_1110  korA; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AOA65_1040  vorA_2; Ketoisovalerate oxidoreductase subunit VorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AOA65_1109  korB; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AOA65_1039  vorA_1; Ketoisovalerate oxidoreductase subunit VorA [KO:K00177] [EC:1.2.7.3]
AOA65_1108  korC; 2-oxoglutarate synthase subunit KorC [KO:K00177] [EC:1.2.7.3]
AOA65_1042  vorC_1; Ketoisovalerate oxidoreductase subunit VorC [KO:K00176] [EC:1.2.7.3]
AOA65_1111  vorC_2; Ketoisovalerate oxidoreductase subunit VorC [KO:K00176] [EC:1.2.7.3]
AOA65_0640  sucD_1; Succinyl-CoA ligase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
AOA65_1675  sucD_2; Succinyl-CoA ligase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
AOA65_0639  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AOA65_0071  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
AOA65_1218  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOA65_1607  pycB_2; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
AOA65_0858  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
AOA65_1937  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
AOA65_2217  vorA_3; Ketoisovalerate oxidoreductase subunit VorA [KO:K00169] [EC:1.2.7.1]
AOA65_1938  porB_1; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
AOA65_2216  porB_2; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
AOA65_1935  porG_1; Pyruvate/ketoisovalerate oxidoreductases common subunit gamma [KO:K00172] [EC:1.2.7.1]
AOA65_2218  porG_2; Pyruvate/ketoisovalerate oxidoreductases common subunit gamma [KO:K00172] [EC:1.2.7.1]
AOA65_1936  porD; Pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
barc00010  Glycolysis / Gluconeogenesis
barc00061  Fatty acid biosynthesis
barc00071  Fatty acid degradation
barc00220  Arginine biosynthesis
barc00250  Alanine, aspartate and glutamate metabolism
barc00280  Valine, leucine and isoleucine degradation
barc00470  D-Amino acid metabolism
barc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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