KEGG   PATHWAY: bbet00630
Entry
bbet00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium betae
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbet00630  Glyoxylate and dicarboxylate metabolism
bbet00630

Module
bbet_M00012  Glyoxylate cycle [PATH:bbet00630]
bbet_M00621  Glycine cleavage system [PATH:bbet00630]
bbet_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bbet00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium betae [GN:bbet]
Gene
F8237_07660  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
F8237_09485  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
F8237_02065  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
F8237_15735  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
F8237_20100  malate synthase G [KO:K01638] [EC:2.3.3.9]
F8237_16310  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F8237_31515  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F8237_17370  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
F8237_17375  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
F8237_16260  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F8237_35130  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_25465  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_18790  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_11195  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_07795  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_17190  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_05405  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_09635  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_02110  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F8237_29645  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
F8237_17195  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
F8237_31225  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
F8237_29985  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
F8237_29565  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
F8237_04755  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
F8237_04765  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
F8237_10435  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
F8237_10420  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
F8237_10415  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
F8237_00180  catalase [KO:K03781] [EC:1.11.1.6]
F8237_14745  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
F8237_23150  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F8237_20620  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F8237_03510  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F8237_30185  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
F8237_32070  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F8237_06905  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
F8237_06900  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
F8237_26235  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
F8237_16710  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
F8237_00790  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F8237_13070  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F8237_31000  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F8237_30705  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
F8237_27535  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
F8237_27545  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
F8237_31760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F8237_16345  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F8237_27540  gcvH; glycine cleavage system protein GcvH [KO:K02437]
F8237_04205  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
F8237_04200  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
F8237_04195  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
F8237_19705  glycerate kinase [KO:K11529] [EC:2.7.1.165]
F8237_05510  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
F8237_23920  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
F8237_02205  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
F8237_04400  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
F8237_08330  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F8237_04390  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F8237_08335  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
F8237_04385  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
F8237_04380  formate dehydrogenase subunit gamma [KO:K00127]
F8237_00860  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
F8237_26515  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
F8237_04250  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bbet00010  Glycolysis / Gluconeogenesis
bbet00020  Citrate cycle (TCA cycle)
bbet00030  Pentose phosphate pathway
bbet00053  Ascorbate and aldarate metabolism
bbet00071  Fatty acid degradation
bbet00230  Purine metabolism
bbet00250  Alanine, aspartate and glutamate metabolism
bbet00260  Glycine, serine and threonine metabolism
bbet00620  Pyruvate metabolism
bbet00710  Carbon fixation by Calvin cycle
bbet00750  Vitamin B6 metabolism
bbet00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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