KEGG   PATHWAY: bbif04145
Entry
bbif04145                   Pathway                                
Name
Phagosome - Bombus bifarius (two-form bumblebee)
Description
Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
Class
Cellular Processes; Transport and catabolism
Pathway map
bbif04145  Phagosome
bbif04145

Other DBs
GO: 0045335
Organism
Bombus bifarius (two-form bumblebee) [GN:bbif]
Gene
117211656  syntaxin-7 [KO:K08488]
117210151  actin-5C [KO:K05692]
117213940  syntaxin-18 [KO:K08492]
117206123  vesicle-trafficking protein SEC22b-B [KO:K08517]
117204914  ras-related protein Rab-5C [KO:K07887]
117214699  phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X1 [KO:K00914] [EC:2.7.1.137]
117208151  hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
117207127  V-type proton ATPase catalytic subunit A [KO:K02145] [EC:7.1.2.2]
117210180  V-type proton ATPase subunit B [KO:K02147]
117205418  V-type proton ATPase subunit C isoform X1 [KO:K02148]
117207953  V-type proton ATPase subunit D [KO:K02149]
117205563  V-type proton ATPase subunit E [KO:K02150]
117204956  V-type proton ATPase subunit F [KO:K02151]
117204188  V-type proton ATPase subunit G [KO:K02152]
117209834  V-type proton ATPase subunit e-like [KO:K02153]
117211689  V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154]
117204810  V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154]
117214793  V-type proton ATPase subunit d [KO:K02146]
117204219  V-type proton ATPase subunit H isoform X1 [KO:K02144]
117213709  V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155]
117211559  V-type proton ATPase 21 kDa proteolipid subunit-like [KO:K03661]
117209416  V-type proton ATPase subunit S1-like [KO:K03662]
117204801  ras-related protein Rab-7a [KO:K07897]
117211550  dynein heavy chain, cytoplasmic isoform X1 [KO:K10413]
117214710  cytoplasmic dynein 2 heavy chain 1 [KO:K10414]
117206396  cytoplasmic dynein 1 intermediate chain-like isoform X1 [KO:K10415]
117208149  cytoplasmic dynein 1 light intermediate chain 2 isoform X1 [KO:K10416]
117205623  tubulin alpha chain-like isoform X1 [KO:K07374]
117205659  tubulin alpha-1 chain-like [KO:K07374]
117213754  tubulin alpha-1 chain-like [KO:K07374]
117207436  tubulin alpha-1 chain [KO:K07374]
117216910  tubulin alpha-1C chain-like isoform X1 [KO:K07374]
117208916  tubulin alpha-1 chain-like [KO:K07374]
117209921  tubulin alpha chain-like isoform X1 [KO:K07374]
117206697  tubulin beta-1 chain [KO:K07375]
117208280  tubulin beta chain-like [KO:K07375]
117208287  tubulin beta chain-like [KO:K07375]
117213218  lysosome-associated membrane glycoprotein 1 [KO:K06528]
117211411  1-phosphatidylinositol 3-phosphate 5-kinase [KO:K00921] [EC:2.7.1.150]
117216874  uncharacterized protein LOC117216874 [KO:K10089]
117209160  nitric oxide synthase, salivary gland [KO:K13240] [EC:1.14.13.39]
117211116  cathepsin L [KO:K01365] [EC:3.4.22.15]
117216863  protein transport protein Sec61 subunit alpha [KO:K10956]
117209178  protein transport protein Sec61 subunit beta [KO:K09481]
117207957  protein transport protein Sec61 subunit gamma [KO:K07342]
117217013  calreticulin [KO:K08057]
117214433  calnexin-like isoform X1 [KO:K08054]
117208795  integrin beta-PS [KO:K05719]
117207675  integrin beta-PS-like isoform X1 [KO:K05719]
117204867  cartilage oligomeric matrix protein [KO:K04659]
117206403  scavenger receptor class B member 1 [KO:K13885]
117214775  ras-related C3 botulinum toxin substrate 1 [KO:K04392]
117204118  ras-like GTP-binding protein RhoL [KO:K04392]
117211993  ras-related protein Rac1 [KO:K04392]
Compound
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Stuart LM, Ezekowitz RA
  Title
Phagocytosis: elegant complexity.
  Journal
Immunity 22:539-50 (2005)
DOI:10.1016/j.immuni.2005.05.002
Reference
  Authors
Tjelle TE, Lovdal T, Berg T
  Title
Phagosome dynamics and function.
  Journal
Reference
  Authors
Dupuy AG, Caron E
  Title
Integrin-dependent phagocytosis: spreading from microadhesion to new concepts.
  Journal
J Cell Sci 121:1773-83 (2008)
DOI:10.1242/jcs.018036
Reference
  Authors
Brumell JH, Grinstein S
  Title
Salmonella redirects phagosomal maturation.
  Journal
Curr Opin Microbiol 7:78-84 (2004)
DOI:10.1016/j.mib.2003.12.005
Reference
  Authors
Huynh KK, Eskelinen EL, Scott CC, Malevanets A, Saftig P, Grinstein S
  Title
LAMP proteins are required for fusion of lysosomes with phagosomes.
  Journal
EMBO J 26:313-24 (2007)
DOI:10.1038/sj.emboj.7601511
Reference
  Authors
Luzio JP, Pryor PR, Bright NA
  Title
Lysosomes: fusion and function.
  Journal
Nat Rev Mol Cell Biol 8:622-32 (2007)
DOI:10.1038/nrm2217
Reference
  Authors
Sumimoto H
  Title
Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.
  Journal
FEBS J 275:3249-77 (2008)
DOI:10.1111/j.1742-4658.2008.06488.x
Related
pathway
bbif04142  Lysosome
bbif04144  Endocytosis
KO pathway
ko04145   
LinkDB

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