KEGG   PATHWAY: bby00630
Entry
bby00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bacillus bombysepticus
Class
Metabolism; Carbohydrate metabolism
Pathway map
bby00630  Glyoxylate and dicarboxylate metabolism
bby00630

Module
bby_M00012  Glyoxylate cycle [PATH:bby00630]
bby_M00621  Glycine cleavage system [PATH:bby00630]
Other DBs
GO: 0046487 0043648
Organism
Bacillus bombysepticus [GN:bby]
Gene
CY96_04855  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CY96_22370  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
CY96_11510  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
CY96_22485  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
CY96_04850  malate synthase [KO:K01638] [EC:2.3.3.9]
CY96_22115  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CY96_10555  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
CY96_22125  citrate synthase [KO:K01647] [EC:2.3.3.1]
CY96_17065  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CY96_19205  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CY96_17120  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CY96_25850  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CY96_05750  3-oxoacyl-ACP synthase [KO:K00023] [EC:1.1.1.36]
CY96_05730  3-hydroxybutyryl-CoA dehydratase [KO:K17865] [EC:4.2.1.55]
CY96_08650  glyoxalase [KO:K05606] [EC:5.1.99.1]
CY96_05655  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
CY96_05650  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
CY96_03505  catalase [KO:K03781] [EC:1.11.1.6]
CY96_04990  catalase [KO:K03781] [EC:1.11.1.6]
CY96_13890  catalase [KO:K03781] [EC:1.11.1.6]
CY96_23690  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CY96_00945  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
CY96_10000  5'-nucleotidase [KO:K01091] [EC:3.1.3.18]
CY96_10065  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CY96_13120  MTA/SAH nucleosidase [KO:K01091] [EC:3.1.3.18]
CY96_17530  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CY96_25690  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CY96_20310  glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
CY96_20305  glycine dehydrogenase [KO:K00283] [EC:1.4.4.2]
CY96_20315  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
CY96_12630  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CY96_19905  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CY96_18930  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CY96_24135  glycine cleavage system protein H [KO:K02437]
CY96_27920  xylose isomerase [KO:K01816] [EC:5.3.1.22]
CY96_00010  glycerate kinase [KO:K00865] [EC:2.7.1.165]
CY96_17760  ketohydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CY96_04450  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
CY96_02115  oxidoreductase [KO:K00123] [EC:1.17.1.9]
CY96_16860  oxidoreductase [KO:K00123] [EC:1.17.1.9]
CY96_12545  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
CY96_18775  amiF; formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bby00010  Glycolysis / Gluconeogenesis
bby00020  Citrate cycle (TCA cycle)
bby00030  Pentose phosphate pathway
bby00053  Ascorbate and aldarate metabolism
bby00071  Fatty acid degradation
bby00230  Purine metabolism
bby00250  Alanine, aspartate and glutamate metabolism
bby00260  Glycine, serine and threonine metabolism
bby00620  Pyruvate metabolism
bby00710  Carbon fixation by Calvin cycle
bby00750  Vitamin B6 metabolism
bby00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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