KEGG   PATHWAY: bdi00630
Entry
bdi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Brachypodium distachyon (stiff brome)
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdi00630  Glyoxylate and dicarboxylate metabolism
bdi00630

Module
bdi_M00012  Glyoxylate cycle [PATH:bdi00630]
bdi_M00532  Photorespiration [PATH:bdi00630]
bdi_M00621  Glycine cleavage system [PATH:bdi00630]
Other DBs
GO: 0046487 0043648
Organism
Brachypodium distachyon (stiff brome) [GN:bdi]
Gene
100841104  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
100839844  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
100827025  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
100835764  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
100836068  acetate/butyrate--CoA ligase AAE7, peroxisomal isoform X1 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
100830169  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
100822821  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100841049  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100841882  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
100832550  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
100831548  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
100832576  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
100838923  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
100821411  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
100838601  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
100842898  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
100838918  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
100836749  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
100822502  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
100835569  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 isoform X2 [KO:K11517] [EC:1.1.3.15]
100842068  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
100841307  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
100824351  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 isoform X1 [KO:K11517] [EC:1.1.3.15]
100826491  catalase-1 [KO:K03781] [EC:1.11.1.6]
100839582  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
100846426  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
100833233  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
100833542  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
100833965  glyoxylate/hydroxypyruvate reductase HPR3 isoform X4 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
100845759  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
100843460  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X2 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
100821332  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
100838606  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
100826858  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
100836828  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
6439897  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
112271745  uncharacterized protein LOC112271745 [KO:K01601] [EC:4.1.1.39]
100840557  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
100829841  ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic [KO:K01602] [EC:4.1.1.39]
100845819  ribulose bisphosphate carboxylase small chain PW9, chloroplastic [KO:K01602] [EC:4.1.1.39]
100825888  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
100842260  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
100844005  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
100827937  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
100824429  glutamine synthetase cytosolic isozyme 1-2 [KO:K01915] [EC:6.3.1.2]
100842712  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
100837122  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
100845598  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
100839382  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
100843106  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
100825964  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
100825645  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
100845191  glycine dehydrogenase (decarboxylating) 2, mitochondrial [KO:K00281] [EC:1.4.4.2]
100824957  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
100830109  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100837564  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X2 [KO:K00382] [EC:1.8.1.4]
100823154  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
100826755  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
100828497  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
100824105  glycine cleavage system H protein, mitochondrial [KO:K02437]
100840924  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
100830190  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
100844926  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
100833888  uncharacterized protein LOC100833888 isoform X1 [KO:K01455] [EC:3.5.1.49]
100822696  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bdi00010  Glycolysis / Gluconeogenesis
bdi00020  Citrate cycle (TCA cycle)
bdi00030  Pentose phosphate pathway
bdi00053  Ascorbate and aldarate metabolism
bdi00071  Fatty acid degradation
bdi00230  Purine metabolism
bdi00250  Alanine, aspartate and glutamate metabolism
bdi00260  Glycine, serine and threonine metabolism
bdi00620  Pyruvate metabolism
bdi00710  Carbon fixation by Calvin cycle
bdi00750  Vitamin B6 metabolism
bdi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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