KEGG   PATHWAY: bfm00020
Entry
bfm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brevibacillus formosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bfm00020  Citrate cycle (TCA cycle)
bfm00020

Module
bfm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bfm00020]
bfm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bfm00020]
bfm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bfm00020]
bfm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bfm00020]
bfm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bfm00020]
Other DBs
GO: 0006099
Organism
Brevibacillus formosus [GN:bfm]
Gene
BP422_27685  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BP422_02080  citrate synthase [KO:K01647] [EC:2.3.3.1]
BP422_16760  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BP422_02085  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BP422_21710  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BP422_07045  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BP422_11595  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BP422_09040  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BP422_12350  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BP422_12345  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BP422_12855  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BP422_12860  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BP422_27375  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BP422_03595  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BP422_03600  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BP422_03590  succinate dehydrogenase [KO:K00241]
BP422_05990  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BP422_23960  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BP422_02090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BP422_23670  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BP422_24765  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BP422_16190  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BP422_20125  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BP422_11610  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BP422_11605  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BP422_21715  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BP422_11600  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bfm00010  Glycolysis / Gluconeogenesis
bfm00053  Ascorbate and aldarate metabolism
bfm00061  Fatty acid biosynthesis
bfm00071  Fatty acid degradation
bfm00190  Oxidative phosphorylation
bfm00220  Arginine biosynthesis
bfm00250  Alanine, aspartate and glutamate metabolism
bfm00280  Valine, leucine and isoleucine degradation
bfm00350  Tyrosine metabolism
bfm00470  D-Amino acid metabolism
bfm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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