KEGG   PATHWAY: bhf00020
Entry
bhf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides heparinolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhf00020  Citrate cycle (TCA cycle)
bhf00020

Module
bhf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhf00020]
bhf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhf00020]
Other DBs
GO: 0006099
Organism
Bacteroides heparinolyticus [GN:bhf]
Gene
C3V43_05845  citrate synthase [KO:K01647] [EC:2.3.3.1]
C3V43_05855  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C3V43_05850  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C3V43_08870  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3V43_04920  3-methyl-2-oxobutanoate dehydrogenase subunit beta [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C3V43_08685  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C3V43_04930  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C3V43_08690  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C3V43_04935  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
C3V43_04915  ferredoxin [KO:K00176] [EC:1.2.7.3]
C3V43_08820  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C3V43_08815  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
C3V43_08825  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
C3V43_07250  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3V43_06225  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3V43_13500  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
C3V43_01160  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
C3V43_09100  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C3V43_12120  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhf00010  Glycolysis / Gluconeogenesis
bhf00053  Ascorbate and aldarate metabolism
bhf00061  Fatty acid biosynthesis
bhf00190  Oxidative phosphorylation
bhf00220  Arginine biosynthesis
bhf00250  Alanine, aspartate and glutamate metabolism
bhf00280  Valine, leucine and isoleucine degradation
bhf00350  Tyrosine metabolism
bhf00470  D-Amino acid metabolism
bhf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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