KEGG   PATHWAY: blh03430
Entry
blh03430                    Pathway                                
Name
Mismatch repair - Bacillus paralicheniformis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
blh03430  Mismatch repair
blh03430

Other DBs
GO: 0006298
Organism
Bacillus paralicheniformis [GN:blh]
Gene
BaLi_c19620  mutS1; DNA mismatch repair recognition factor MutS [KO:K03555]
BaLi_c30870  mutS2; DNA mismatch repair enzyme MutS [KO:K07456]
BaLi_c19630  mutL; DNA mismatch repair factor MutL [KO:K03572]
BaLi_c35960  helD; DNA 3'-5' helicase IV [KO:K03657] [EC:5.6.2.4]
BaLi_c14130  yjcD; putative ATP-dependent DNA helicase YjcD [KO:K03657] [EC:5.6.2.4]
BaLi_c08040  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
BaLi_c26870  xseA; exodeoxyribonuclease VII large subunit XseA [KO:K03601] [EC:3.1.11.6]
BaLi_c26860  xseB; exodeoxyribonuclease VII small subunit XseB [KO:K03602] [EC:3.1.11.6]
BaLi_c29870  recJ; single-strand DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
BaLi_c38850  ssbB; single-strand DNA-binding protein SsbB [KO:K03111]
BaLi_c43440  ssbA; single-strand DNA-binding protein SsbA [KO:K03111]
BaLi_c31530  dnaE; DNA polymerase 3 alpha subunit DnaE [KO:K02337] [EC:2.7.7.7]
BaLi_c19130  polC; DNA polymerase 3 [KO:K03763] [EC:2.7.7.7]
BaLi_c00020  dnaN; DNA polymerase 3 [KO:K02338] [EC:2.7.7.7]
BaLi_c00300  dnaX; DNA polymerase 3 [KO:K02343] [EC:2.7.7.7]
BaLi_c28330  holA; DNA polymerase delta subunit HolA [KO:K02340] [EC:2.7.7.7]
BaLi_c00460  holB; DNA polymerase 3 delta' subunit HolB [KO:K02341] [EC:2.7.7.7]
BaLi_c08050  ligA; DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
BaLi_c06850  hypothetical protein [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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